Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607030440_1ogp TGATATTGTTATTTAAGTTTGAGTCATTCTTG(+ATATAT)GTACCTGTTGTATCAAGGTTTTTTTCTTTTT NGG 10 8 17 8 24 0 100 5 10
    240607030439_kph5 GCTTAAAGTCACCTACAGTTCCAGCTCCAGAG(+ATATAT)GATCCAATGCCCTCTTCTAGCCTCCAGGGGT NGG 10 8 17 8 24 0 100 5 10
    240607030437_yqyp CAGGAACCCCTGGAGGCTAGAAGAGGGCATTG(+ATATAT)GATCCTCTGGAGCTGGAACTGTAGGTGACTT NGG 10 8 17 8 24 0 100 5 10
    240607030436_ouqu CCAGTGGGTCAGAAAACCCATGCTGTATCAAG(+ATATAT)GTACCAAGATTATCGGATACTGTGAAGTGAC NGG 10 8 17 8 24 0 100 5 10
    240607030435_6ehg TATAAGTCACTTCACAGTATCCGATAATCTTG(+ATATAT)GTACCTTGATACAGCATGGGTTTTCTGACCC NGG 10 8 17 8 24 0 100 5 10
    240607030434_h51d GCTGGGCAGGTCAGTGGCAGAGGTGGAACACG(+ATATAT)GATCCCTTCCTGACCGCGTGGTAGGTAACTT NGG 10 8 17 8 24 0 100 5 10
    240607030432_9r3m GTCGAAAGTTACCTACCACGCGGTCAGGAAGG(+ATATAT)GATCCGTGTTCCACCTCTGCCACTGACCTGC NGG 10 8 17 8 24 0 100 5 10
    240607030431_h40h AGGAGTTAGTTAAATGCTGAAGAGGCTCTCAG(+ATATAT)GTACCCACATCCTGAACCGTGGGGGCTGAGC NGG 10 8 17 8 24 0 100 5 10
    240607030429_0y06 CCTGGGCTCAGCCCCCACGGTTCAGGATGTGG(+ATATAT)GTACCTGAGAGCCTCTTCAGCATTTAACTAA NGG 10 8 17 8 24 0 100 5 10
    240607030428_6md8 CAGGACAGGTTAAAAGGAAACAGCCAAGTGAG(+ATATAT)GTACCTTAGCTGGCAGCAGCGCGAGGCGTGA NGG 10 8 17 8 24 0 100 5 10