Enter the position


Example input
More Parameters

Examples:

Type Chromosome Start position Editing pattern
Substitution chr1 943995 /T
Insertion chr1 943995 +GTATT
Deletion chr1 943995 -GAGAACTCGG

Above examples represent the input formats of three different editing types. The user should enter chromosome, starting position, and the editing pattern.

In these examples, the 943995th base in chr1 is base 'C', and the next 20 consecutive bases are 'GAGAACTCGGCACAGGAGAG').

  • The editing pattern begins with '/' ,'+' or '-' ,followed by the specific base sequence.

  • Substitution is indicated by backslash "/", and the example is used to replace C with T.

  • Insertion is indicated by plus sign "+", and the example indicates that GTATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GAGAACTCGG will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAS Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology
    Use an example: Substitution Insertion Deletion
    Chromosome
    Start position
    Editing pattern
    Example for BED file
    HISTORY
    UID Chromosome Position EDIT_PATTERN PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240813142819_s09kqh42 chr21 39393246 /T NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09kll51 chr11 4138332 /T NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09kh0ej chr7 55173019 /T NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09kejky chr2 169275088 /G NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09ke1bz chr19 39389692 /A NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09kdrhd chr4 55080079 /C NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09kcp4t chr9 76134148 /G NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09k9wbo chr1 119916029 /A NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09k62zm chr16 2054376 /A NGG 10 8 17 8 24 0 100 5 10
    240813142819_s09k5wwb chr17 43045786 /G NGG 10 8 17 8 24 0 100 5 10