Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607013719_cxob CTGGTGACAAATGGCAGATGTGCCATATATGG(+ATATAT)GATCCTTTACTTGGAAAGAAATTAGTCAGGG NGG 10 8 17 8 24 0 100 5 10
    240607013718_9imv CCTTCCCCTGACTAATTTCTTTCCAAGTAAAG(+ATATAT)GATCCCATATATGGCACATCTGCCATTTGTC NGG 10 8 17 8 24 0 100 5 10
    240607013716_ryz5 TGGGATGTGGAGAGAAGGTATTCTATGAGTGG(+ATATAT)GTACCACTGTTAGGACATGGGGGTCGGGGCG NGG 10 8 17 8 24 0 100 5 10
    240607013715_i3x4 TTTACCGCCCCGACCCCCATGTCCTAACAGTG(+ATATAT)GTACCCACTCATAGAATACCTTCTCTCCACA NGG 10 8 17 8 24 0 100 5 10
    240607013714_tm47 GGGATTATATGATGGGCTGGAGGAGTTTGGAG(+ATATAT)GATCCCCATTCAGAGTGGGGCCTAGGGCCTG NGG 10 8 17 8 24 0 100 5 10
    240607013712_q9jt ACAACCAGGCCCTAGGCCCCACTCTGAATGGG(+ATATAT)GATCCTCCAAACTCCTCCAGCCCATCATATA NGG 10 8 17 8 24 0 100 5 10
    240607013711_4xzc TAGTAATAGAACAGTGATTAAGACAAAAGTTG(+ATATAT)GTACCAAGGAGCAAAGTATTCTATGAAAAGC NGG 10 8 17 8 24 0 100 5 10
    240607013709_y5xw GTTAGGCTTTTCATAGAATACTTTGCTCCTTG(+ATATAT)GTACCAACTTTTGTCTTAATCACTGTTCTAT NGG 10 8 17 8 24 0 100 5 10
    240607013707_967v ATGGATTTCTTACTCCTCTTCTCCATGGCTGG(+ATATAT)GATCCTAGCTTCAGTCCTCATATCTGTTTAC NGG 10 8 17 8 24 0 100 5 10
    240607013706_9m0a GGTGAGTAAACAGATATGAGGACTGAAGCTAG(+ATATAT)GATCCCAGCCATGGAGAAGAGGAGTAAGAAA NGG 10 8 17 8 24 0 100 5 10