Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606171717_gox0 AGGTTTCCTAGGAAGGGGTCCTGGGCAGCACG(+AAAAAA)GATCCACAGCTCCCACCCTTTCCTGGGCTGG NGG 10 8 17 8 24 0 100 5 10
    240606171715_u85k ACATTCCAGCCCAGGAAAGGGTGGGAGCTGTG(+AAAAAA)GATCCGTGCTGCCCAGGACCCCTTCCTAGGA NGG 10 8 17 8 24 0 100 5 10
    240606171714_oe0h AGTGAGAACAAAGGAAAGAGAATCCAAGTGTG(+AAAAAA)GATCCCACCCATCCCAACAACCCTTAAATCT NGG 10 8 17 8 24 0 100 5 10
    240606171712_ru5q ATTTGAGATTTAAGGGTTGTTGGGATGGGTGG(+AAAAAA)GATCCACACTTGGATTCTCTTTCCTTTGTTC NGG 10 8 17 8 24 0 100 5 10
    240606171711_un3m TCTTTGAGAACCTCAACACGTCTGCCTATCAG(+AAAAAA)GATCCATGACGGACCCAGCAATTCTCATCTA NGG 10 8 17 8 24 0 100 5 10
    240606171710_30a9 TGGTGTAGATGAGAATTGCTGGGTCCGTCATG(+AAAAAA)GATCCTGATAGGCAGACGTGTTGAGGTTCTC NGG 10 8 17 8 24 0 100 5 10
    240606171708_tcqq TTGAGTGGGAGGAAAGAAACCAGGTGTGAAGG(+AAAAAA)GTACCTATTGATAAAATTAAACAATAACTAT NGG 10 8 17 8 24 0 100 5 10
    240606171707_d46e GATGTATAGTTATTGTTTAATTTTATCAATAG(+AAAAAA)GTACCCTTCACACCTGGTTTCTTTCCTCCCA NGG 10 8 17 8 24 0 100 5 10
    240606171706_hr1l CTCTTATTAGAGTTACATTCACATTTGTAGTG(+AAAAAA)GATCCTGTCACTTTTTCATTCTAAGTTTAAT NGG 10 8 17 8 24 0 100 5 10
    240606171704_lwk2 TTCTAATTAAACTTAGAATGAAAAAGTGACAG(+AAAAAA)GATCCACTACAAATGTGAATGTAACTCTAAT NGG 10 8 17 8 24 0 100 5 10