Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605203644_3chx ATTGTGCTCAGTGCTCTCCTTACTAGAATCAG(+CAGTGT)GTACCTTGGACCAGAGAGAAGCAGCTAGGGG NGG 10 8 17 8 24 0 100 5 10
    240605203642_odpx ATTCACAACCATCTGTAACCTGAGTTTCAGGG(+CAGTGT)GATCCAACACCTTCTTCTGGCCTCTGTAGGT NGG 10 8 17 8 24 0 100 5 10
    240605203640_5tyw CTGGTACCTACAGAGGCCAGAAGAAGGTGTTG(+CAGTGT)GATCCCCTGAAACTCAGGTTACAGATGGTTG NGG 10 8 17 8 24 0 100 5 10
    240605203639_v1m2 CCAGAGGGGACCTAAGACTCTAGAGCTACATG(+CAGTGT)GATCCAGGAACACTCCTAGCTTTCTTGTAGG NGG 10 8 17 8 24 0 100 5 10
    240605203637_7yjv AAGGCCCTACAAGAAAGCTAGGAGTGTTCCTG(+CAGTGT)GATCCATGTAGCTCTAGAGTCTTAGGTCCCC NGG 10 8 17 8 24 0 100 5 10
    240605203635_fazp GAGTATAAACTGTGGGGTCCTCAGTCCCACAG(+CAGTGT)GATCCCAAGCCACTTGGCATGCCCAGCGAGT NGG 10 8 17 8 24 0 100 5 10
    240605203634_5w6p TCATGACTCGCTGGGCATGCCAAGTGGCTTGG(+CAGTGT)GATCCTGTGGGACTGAGGACCCCACAGTTTA NGG 10 8 17 8 24 0 100 5 10
    240605203632_6vzu AGTGTCTGGGTTTGATGGTTGTTTATGGGATG(+CAGTGT)GATCCAGAGGCACTTATCTGGACCTGCTGCT NGG 10 8 17 8 24 0 100 5 10
    240605203630_8t46 GCCAAAGCAGCAGGTCCAGATAAGTGCCTCTG(+CAGTGT)GATCCATCCCATAAACAACCATCAAACCCAG NGG 10 8 17 8 24 0 100 5 10
    240605203629_yeih GACTCGTGGCTAGTACTGCTTCCCCAGACTGG(+CAGTGT)GTACCTCCTACCCCCCCTCCCCCCCACACAC NGG 10 8 17 8 24 0 100 5 10