Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604194032_380z TCTAGGAGATAGTGGGGTGTGCAGTCCCTGGG(+ACTCAC)GATCCCTGGCATCTCTCCTGAGAAAGCCCCC NGG 10 8 17 8 24 0 100 5 10
    240604194031_38zh TACCTTCTATGAGCGCTGCCTACCTGTTTGTG(+ACTCAC)GTACCCTGTGATGGAGGGCCTCACAGCCACA NGG 10 8 17 8 24 0 100 5 10
    240604194029_07kk ACTAGTGTGGCTGTGAGGCCCTCCATCACAGG(+ACTCAC)GTACCACAAACAGGTAGGCAGCGCTCATAGA NGG 10 8 17 8 24 0 100 5 10
    240604194028_7bci CTCCAATGGCTCTGGCCACTGCTTCTTCATCG(+ACTCAC)GATCCTGTTCTCCAGAAGCCCCAGAGAATGG NGG 10 8 17 8 24 0 100 5 10
    240604194026_duwd TCCATCCATTCTCTGGGGCTTCTGGAGAACAG(+ACTCAC)GATCCGATGAAGAAGCAGTGGCCAGAGCCAT NGG 10 8 17 8 24 0 100 5 10
    240604194025_11x3 TGAACACCCAGGCCTTTGGGGATGAGCTGCTG(+ACTCAC)GTACCCACTTCTGAAGAGACAGGTGGCCACT NGG 10 8 17 8 24 0 100 5 10
    240604194024_g8sl GCTCCAGTGGCCACCTGTCTCTTCAGAAGTGG(+ACTCAC)GTACCAGCAGCTCATCCCCAAAGGCCTGGGT NGG 10 8 17 8 24 0 100 5 10
    240604194021_y3ts ACAGGTGGCCACTGGAGCCCTCTTGGTCCCAG(+ACTCAC)GATCCCCCCCTCACCACTCCAGACTTAGCTT NGG 10 8 17 8 24 0 100 5 10
    240604194019_51j9 GTTCAAAGCTAAGTCTGGAGTGGTGAGGGGGG(+ACTCAC)GATCCTGGGACCAAGAGGGCTCCAGTGGCCA NGG 10 8 17 8 24 0 100 5 10
    240604194017_dq60 TGTCTAAGACCCATGCTGTGCCAGCCGGCCTG(+ACTCAC)GTACCTATGGGAGTTTTCACGTTCCGGTGTG NGG 10 8 17 8 24 0 100 5 10