Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613130900_3502 AGAAAGGGAGGGATAACCTCTTTCTCAACTAG(+AGGACA)GTACCAGCTTGAGTCCTTATGTCAAAGGCGA NGG 10 8 17 8 24 0 100 5 10
    240613130858_dumg CTTCATCGCCTTTGACATAAGGACTCAAGCTG(+AGGACA)GTACCTAGTTGAGAAAGAGGTTATCCCTCCC NGG 10 8 17 8 24 0 100 5 10
    240613130857_muye ACACTGAGAGAGCAGCAATAACTATCACCTCG(+AGGACA)GATCCAGAGTAACACTGAAGTACACGGAGGC NGG 10 8 17 8 24 0 100 5 10
    240613130855_1chk GGCTGGCCTCCGTGTACTTCAGTGTTACTCTG(+AGGACA)GATCCGAGGTGATAGTTATTGCTGCTCTCTC NGG 10 8 17 8 24 0 100 5 10
    240613130854_d2wd TTTAACTTAACTGGGGTTGACAATTCAAATAG(+AGGACA)GTACCTCCCCCCACCCCCCCAAACAAAAACC NGG 10 8 17 8 24 0 100 5 10
    240613130852_1vxd AGTCAGGTTTTTGTTTGGGGGGGTGGGGGGAG(+AGGACA)GTACCTATTTGAATTGTCAACCCCAGTTAAG NGG 10 8 17 8 24 0 100 5 10
    240613130851_yot4 ACCTGCCCTCAATCCTAGAGGGAAGACTGAAG(+AGGACA)GTACCCTTGGGGCTGGAATCTTGAGACAGCC NGG 10 8 17 8 24 0 100 5 10
    240613130849_67mc CCACAGGCTGTCTCAAGATTCCAGCCCCAAGG(+AGGACA)GTACCTTCAGTCTTCCCTCTAGGATTGAGGG NGG 10 8 17 8 24 0 100 5 10
    240613130846_4m8x GGTCCCTTCACACTATGTCCACATTTACCTGG(+AGGACA)GTACCACATGAAAGATGGAGGAGGCGGGACT NGG 10 8 17 8 24 0 100 5 10
    240613130845_ffa9 GCATTAGTCCCGCCTCCTCCATCTTTCATGTG(+AGGACA)GTACCCAGGTAAATGTGGACATAGTGTGAAG NGG 10 8 17 8 24 0 100 5 10