Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613113228_pshs CTTGAGAGAAAGACAGCCAGTGGTGAGTATAG(+AGGACA)GATCCGGCCACATGACCTTGACCTCACTTCA NGG 10 8 17 8 24 0 100 5 10
    240613113226_8sgi TTATCCACAGGACCTGGGTGGAGCAGGATATG(+AGGACA)GATCCCTCATACTGAAAGATGTAGGGAAAAG NGG 10 8 17 8 24 0 100 5 10
    240613113225_3uo0 ACTTCCTTTTCCCTACATCTTTCAGTATGAGG(+AGGACA)GATCCATATCCTGCTCCACCCAGGTCCTGTG NGG 10 8 17 8 24 0 100 5 10
    240613113223_4wa2 GGGGTACGTTATCTACTGCCTTCTCCCTTCTG(+AGGACA)GATCCACGATAAAGCTCTGGCTTTAATAAAC NGG 10 8 17 8 24 0 100 5 10
    240613113222_fc2x AACCAGTTTATTAAAGCCAGAGCTTTATCGTG(+AGGACA)GATCCAGAAGGGAGAAGGCAGTAGATAACGT NGG 10 8 17 8 24 0 100 5 10
    240613113221_qirw CCCTGCGGTGGGAGGGGCAGGCAGGGGAGGTG(+AGGACA)GTACCCTCCCACCAACCTGAGCCCACTCTCT NGG 10 8 17 8 24 0 100 5 10
    240613113220_hamx TCTGAACAAAAGGAAGGAAAATGATTGGACAG(+AGGACA)GTACCCCACAAACTTTCCATCTAAGTGTTGC NGG 10 8 17 8 24 0 100 5 10
    240613113218_m5oo GTTGGGCAACACTTAGATGGAAAGTTTGTGGG(+AGGACA)GTACCTGTCCAATCATTTTCCTTCCTTTTGT NGG 10 8 17 8 24 0 100 5 10
    240613113216_o811 CCCTAGCCTAGGGCTTCGACATTGCATGCTGG(+AGGACA)GATCCAGCTCCTACCCTTCCTGCACTCCCTT NGG 10 8 17 8 24 0 100 5 10
    240613113215_ykst TGGGGAAGGGAGTGCAGGAAGGGTAGGAGCTG(+AGGACA)GATCCCAGCATGCAATGTCGAAGCCCTAGGC NGG 10 8 17 8 24 0 100 5 10