Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607002204_pjtv ACAGGTAGACGGATGGGGCGCTCCGAGCTCGG(+ATATAT)GTACCAGAGCATGAAGGATCAGAATGGTAAG NGG 10 8 17 8 24 0 100 5 10
    240607002202_rk2z AACATAATTAGAAAGTCTCCTTCTGGCTGATG(+ATATAT)GTACCACTGGTCTCTCACCACACTAAGGTTT NGG 10 8 17 8 24 0 100 5 10
    240607002200_ib7n TGGCAAAACCTTAGTGTGGTGAGAGACCAGTG(+ATATAT)GTACCATCAGCCAGAAGGAGACTTTCTAATT NGG 10 8 17 8 24 0 100 5 10
    240607002159_wrpg GCTAGTCCTATACTTTTACTTAATCTTCTCTG(+ATATAT)GTACCAGGTAATATTCTCTTTCTTTCTCCTG NGG 10 8 17 8 24 0 100 5 10
    240607002157_5mr3 CTGGGCAGGAGAAAGAAAGAGAATATTACCTG(+ATATAT)GTACCAGAGAAGATTAAGTAAAAGTATAGGA NGG 10 8 17 8 24 0 100 5 10
    240607002156_1rju TTAGAAACAGTCTCAGACTTTTTTACAGAAAG(+ATATAT)GTACCGATAAACAATACACCCTGAGTCTTCA NGG 10 8 17 8 24 0 100 5 10
    240607002154_fsyp AGTCTTGAAGACTCAGGGTGTATTGTTTATCG(+ATATAT)GTACCTTTCTGTAAAAAAGTCTGAGACTGTT NGG 10 8 17 8 24 0 100 5 10
    240607002153_n5v2 CGCTTTTTCTTCTTCTTTTAATTTCTCTATGG(+ATATAT)GATCCTGGAGTTCTGGTTCCTTACTGAAGGC NGG 10 8 17 8 24 0 100 5 10
    240607002151_fpuo GGGTTGCCTTCAGTAAGGAACCAGAACTCCAG(+ATATAT)GATCCCATAGAGAAATTAAAAGAAGAAGAAA NGG 10 8 17 8 24 0 100 5 10
    240607002150_3otd AAATAACCTAGAATCATCTCCAGACTCTAAAG(+ATATAT)GATCCTATTCATTGTTTCCCCCTCCCCAAGG NGG 10 8 17 8 24 0 100 5 10