Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606213528_u0pj GGCAGTTTCCTGAGACTGTAAAGTATTCCAGG(+ATATAT)GATCCTTTTCCTGTGCGGATGCAGAAGCCAT NGG 10 8 17 8 24 0 100 5 10
    240606213527_u34y CTGGCATGGCTTCTGCATCCGCACAGGAAAAG(+ATATAT)GATCCCTGGAATACTTTACAGTCTCAGGAAA NGG 10 8 17 8 24 0 100 5 10
    240606213525_lcji CAACACCATTTACCTAGAAAGGACCAAGTTTG(+ATATAT)GATCCTGAAGCCCAGTGGAGCACCATTCTCT NGG 10 8 17 8 24 0 100 5 10
    240606213524_z1v0 CAGGCAGAGAATGGTGCTCCACTGGGCTTCAG(+ATATAT)GATCCAAACTTGGTCCTTTCTAGGTAAATGG NGG 10 8 17 8 24 0 100 5 10
    240606213522_an8f TGAGAAGAGCCTCTGACAGGCATCAGAGCTGG(+ATATAT)GATCCTGACCAAGGGACACTCAGGCTGCCAC NGG 10 8 17 8 24 0 100 5 10
    240606213521_75qm AGCTGGTGGCAGCCTGAGTGTCCCTTGGTCAG(+ATATAT)GATCCCAGCTCTGATGCCTGTCAGAGGCTCT NGG 10 8 17 8 24 0 100 5 10
    240606213518_bm26 ACAGATAGTGTATGAAATACACAATTTCCCAG(+ATATAT)GTACCAAGGGCCAATAGCAAAAAGGGTCTCT NGG 10 8 17 8 24 0 100 5 10
    240606213515_q3oh CTTTTAGAGACCCTTTTTGCTATTGGCCCTTG(+ATATAT)GTACCTGGGAAATTGTGTATTTCATACACTA NGG 10 8 17 8 24 0 100 5 10
    240606213511_g3hx TTGACTGTCTCTGCATAGTCTTGATACCCCAG(+ATATAT)GATCCTGACATCCCCAGAAATTATACCCCGC NGG 10 8 17 8 24 0 100 5 10
    240606213510_uf21 GGGGGGCGGGGTATAATTTCTGGGGATGTCAG(+ATATAT)GATCCTGGGGTATCAAGACTATGCAGAGACA NGG 10 8 17 8 24 0 100 5 10