Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606165358_tzb2 AAAAACCTTGATAATAGGCTAGGTTGTTGGAG(+AAAAAA)GATCCCATGGGGCCCCTTCAGCCAACAACTA NGG 10 8 17 8 24 0 100 5 10
    240606165356_22g7 TAATCTAGTTGTTGGCTGAAGGGGCCCCATGG(+AAAAAA)GATCCTCCAACAACCTAGCCTATTATCAAGG NGG 10 8 17 8 24 0 100 5 10
    240606165354_5vmh CAGTCAACCTCAGGAGGTCGGATGTTGAGGGG(+AAAAAA)GATCCTCCATAATGTACCAGAGACCTGGGAA NGG 10 8 17 8 24 0 100 5 10
    240606165352_z3m6 CTCACTTCCCAGGTCTCTGGTACATTATGGAG(+AAAAAA)GATCCCCCTCAACATCCGACCTCCTGAGGTT NGG 10 8 17 8 24 0 100 5 10
    240606165351_5v33 AAATCAGTAATGTTATCTAGCTAAAAGAATAG(+AAAAAA)GTACCCTGCATTATATTATGTAAGATTAAAA NGG 10 8 17 8 24 0 100 5 10
    240606165349_bzht TTTGTTTTTAATCTTACATAATATAATGCAGG(+AAAAAA)GTACCTATTCTTTTAGCTAGATAACATTACT NGG 10 8 17 8 24 0 100 5 10
    240606165347_4ncm TCCTCCAACATTTGTCTAAAAAGTATCCAGTG(+AAAAAA)GTACCTGGAGGGCTGAACAGTTGTACTATAA NGG 10 8 17 8 24 0 100 5 10
    240606165345_swaz TCAAGTTATAGTACAACTGTTCAGCCCTCCAG(+AAAAAA)GTACCACTGGATACTTTTTAGACAAATGTTG NGG 10 8 17 8 24 0 100 5 10
    240606165344_qd6h CTGGACTGTTTAGAAGAACATACTAAACACGG(+AAAAAA)GTACCAAAGGTGACTGCTTTCTTTAGTAACT NGG 10 8 17 8 24 0 100 5 10
    240606165342_a0y7 AACTGAGTTACTAAAGAAAGCAGTCACCTTTG(+AAAAAA)GTACCCGTGTTTAGTATGTTCTTCTAAACAG NGG 10 8 17 8 24 0 100 5 10