Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606132928_e4in CCCAAAGTTCGGGATTGCTCCACCTTTGACTG(+AAAAAA)GTACCAAGGGGACCCAGGGGCTGCTGAGCTT NGG 10 8 17 8 24 0 100 5 10
    240606132927_3c26 GGCCACCCCAACAGATGGGCTCCCTTCTATGG(+AAAAAA)GATCCCCAAAGGGCAGGTCCTGGCCGCTGGA NGG 10 8 17 8 24 0 100 5 10
    240606132925_3da4 AGCTGTCCAGCGGCCAGGACCTGCCCTTTGGG(+AAAAAA)GATCCCATAGAAGGGAGCCCATCTGTTGGGG NGG 10 8 17 8 24 0 100 5 10
    240606132923_vgp5 ATGCCATGGCTGCACTGGACACAGGAGAAGGG(+AAAAAA)GTACCAGTCACTGACGCCAGGCTGCTGTGCC NGG 10 8 17 8 24 0 100 5 10
    240606132922_wb26 AGGGTGGCACAGCAGCCTGGCGTCAGTGACTG(+AAAAAA)GTACCCCTTCTCCTGTGTCCAGTGCAGCCAT NGG 10 8 17 8 24 0 100 5 10
    240606132920_31ni ACAAGAAAGCCGCTCTCGTCTGCAGGACACGG(+AAAAAA)GATCCTGCGTGGCTCACAGCGGCAGCTGCCA NGG 10 8 17 8 24 0 100 5 10
    240606132919_6r8o AGAAGTGGCAGCTGCCGCTGTGAGCCACGCAG(+AAAAAA)GATCCCGTGTCCTGCAGACGAGAGCGGCTTT NGG 10 8 17 8 24 0 100 5 10
    240606132918_4hv3 CCAGTTTTTCTCAGATTTAGGGAGAATACATG(+AAAAAA)GTACCTTTTACCTACCCATACTAGAAACTAA NGG 10 8 17 8 24 0 100 5 10
    240606132916_yytc TGTAGTTAGTTTCTAGTATGGGTAGGTAAAAG(+AAAAAA)GTACCATGTATTCTCCCTAAATCTGAGAAAA NGG 10 8 17 8 24 0 100 5 10
    240606132914_wjsk AAGTGGGGAGGAATGGTACTATTGGCATGGGG(+AAAAAA)GTACCTGGTATTGAAAATGGACACATAAACT NGG 10 8 17 8 24 0 100 5 10