Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605224931_zyn9 GAGATTCTTTTTCTTGATATTCTAAATAAAAG(+CAGTGT)GATCCCCAAACTTGGTATTCCCATGTATGTC NGG 10 8 17 8 24 0 100 5 10
    240605224929_uo8t TCACTGTGCTGTCCATTACTAGCTCCCAAATG(+CAGTGT)GTACCCTTCACCTTAACCATCACAGCAGTGT NGG 10 8 17 8 24 0 100 5 10
    240605224927_a588 CTACTACACTGCTGTGATGGTTAAGGTGAAGG(+CAGTGT)GTACCATTTGGGAGCTAGTAATGGACAGCAC NGG 10 8 17 8 24 0 100 5 10
    240605224926_8b4z GATCAGTTCTGTTAGGGTGAGACCCGAATTTG(+CAGTGT)GATCCCCAACAGTTGTGGAGTATTTCATCCT NGG 10 8 17 8 24 0 100 5 10
    240605224924_813g CTGCCAGGATGAAATACTCCACAACTGTTGGG(+CAGTGT)GATCCAAATTCGGGTCTCACCCTAACAGAAC NGG 10 8 17 8 24 0 100 5 10
    240605224922_g54o GGGTCAAACCTGCATGTGGTAATTTGATCTGG(+CAGTGT)GATCCAGATATTCAGACTTGGTTAGGTGTAC NGG 10 8 17 8 24 0 100 5 10
    240605224921_p74f AAGGAGTACACCTAACCAAGTCTGAATATCTG(+CAGTGT)GATCCCAGATCAAATTACCACATGCAGGTTT NGG 10 8 17 8 24 0 100 5 10
    240605224919_xrtt AGGAGCCCTTCTGTGTTCCTGATATTGCCATG(+CAGTGT)GATCCTTAATCTTGTCATCTTTCATATTAAG NGG 10 8 17 8 24 0 100 5 10
    240605224918_ut4c TCTGCCTTAATATGAAAGATGACAAGATTAAG(+CAGTGT)GATCCATGGCAATATCAGGAACACAGAAGGG NGG 10 8 17 8 24 0 100 5 10
    240605224916_s6kg ACCTCCTGGGGGATTTCTCATCAGCCATCTTG(+CAGTGT)GATCCTCTGTCCAGACTGTCATGGAAGAATG NGG 10 8 17 8 24 0 100 5 10