Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605220305_f0ew CTCTGCATCTGGCTTTTTACATGGCTGCTGGG(+CAGTGT)GATCCAAACTCGGGATATCATGCTTGTACCA NGG 10 8 17 8 24 0 100 5 10
    240605220304_crjz GGCCGTGGTACAAGCATGATATCCCGAGTTTG(+CAGTGT)GATCCCCAGCAGCCATGTAAAAAGCCAGATG NGG 10 8 17 8 24 0 100 5 10
    240605220302_600e TACTGCAAGAAAAAAAAATAAAACATTTCTTG(+CAGTGT)GTACCATAACTGTATCATTGTACCCAAATGC NGG 10 8 17 8 24 0 100 5 10
    240605220301_n01m CCCTAGCATTTGGGTACAATGATACAGTTATG(+CAGTGT)GTACCAAGAAATGTTTTATTTTTTTTTCTTG NGG 10 8 17 8 24 0 100 5 10
    240605220258_w78c TTCCCTGCATGCCTCTTCCCCTGAGCCCAGGG(+CAGTGT)GTACCTGGTCCCCATTTCCTACTCCTCTTTT NGG 10 8 17 8 24 0 100 5 10
    240605220256_ggeq TTGTTAAAAGAGGAGTAGGAAATGGGGACCAG(+CAGTGT)GTACCCCTGGGCTCAGGGGAAGAGGCATGCA NGG 10 8 17 8 24 0 100 5 10
    240605220254_vdpl CCCTATGCAGACCTTCCTTCCCCTATATCCAG(+CAGTGT)GATCCCTGCATCCTTTCCTGGATCTGTTCCA NGG 10 8 17 8 24 0 100 5 10
    240605220252_a9m1 AGCCCTGGAACAGATCCAGGAAAGGATGCAGG(+CAGTGT)GATCCTGGATATAGGGGAAGGAAGGTCTGCA NGG 10 8 17 8 24 0 100 5 10
    240605220250_6twk GGCCTGGGTTTAAGTGGGGCTTCTTGTCTGGG(+CAGTGT)GTACCAAGATAGGGAAAGAAAGAAATAATGA NGG 10 8 17 8 24 0 100 5 10
    240605220248_budv GGCAGTCATTATTTCTTTCTTTCCCTATCTTG(+CAGTGT)GTACCCCAGACAAGAAGCCCCACTTAAACCC NGG 10 8 17 8 24 0 100 5 10