Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605202153_hozw TAAGGAAGACCACCACTTGCATATCTTCAAAG(+CAGTGT)GATCCTTTATTGACCAGAGCAGGACCGTGGC NGG 10 8 17 8 24 0 100 5 10
    240605202152_ngxv TAATAGGGGTGGGGAATCAATAAACATGAATG(+CAGTGT)GTACCTACTACTCCTTTCTTTCCTCATTAAG NGG 10 8 17 8 24 0 100 5 10
    240605202151_or8a GTACTCTTAATGAGGAAAGAAAGGAGTAGTAG(+CAGTGT)GTACCATTCATGTTTATTGATTCCCCACCCC NGG 10 8 17 8 24 0 100 5 10
    240605202149_7r7t TAATCCCACTACTTGGGAGGCAGAGGCAGGGG(+CAGTGT)GATCCCTTGAGTTCAAGGCCAGTCTGGTCTA NGG 10 8 17 8 24 0 100 5 10
    240605202147_nmzd TTAGTTAGACCAGACTGGCCTTGAACTCAAGG(+CAGTGT)GATCCCCCTGCCTCTGCCTCCCAAGTAGTGG NGG 10 8 17 8 24 0 100 5 10
    240605202146_et4y CTCCTGGCTATAGCCCTCATCTCCAATTTTAG(+CAGTGT)GATCCCTTAAGACTTGACTACACCTTTTCCT NGG 10 8 17 8 24 0 100 5 10
    240605202143_iuln AGGTCAGGAAAAGGTGTAGTCAAGTCTTAAGG(+CAGTGT)GATCCTAAAATTGGAGATGAGGGCTATAGCC NGG 10 8 17 8 24 0 100 5 10
    240605202141_4hv4 TTGGACTTCAATAGAAACGATGTGGTGTCCTG(+CAGTGT)GTACCATGGCCAGACCCAGCACACGGGGTTC NGG 10 8 17 8 24 0 100 5 10
    240605202139_jeqo CGGGCGAACCCCGTGTGCTGGGTCTGGCCATG(+CAGTGT)GTACCAGGACACCACATCGTTTCTATTGAAG NGG 10 8 17 8 24 0 100 5 10
    240605202138_8ra3 CCCAAGCCGGTTCCTTACCGCGGCCTGAGCCG(+CAGTGT)GATCCTACCATCCCTTTGATGGAACAGCTGA NGG 10 8 17 8 24 0 100 5 10