Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604232709_yozd CTGCAAGCTCCACTACCGCTTACCCCTACCAG(+ACTCAC)GATCCAGCCCAGCCCCTCCCCCACCGGACTG NGG 10 8 17 8 24 0 100 5 10
    240604232707_s1k1 AAAATAATATTTGGGTGAATGATACTGCCATG(+ACTCAC)GATCCTTTTGTTTAATTTTATATATAAGCTC NGG 10 8 17 8 24 0 100 5 10
    240604232706_1e2k TATCCGAGCTTATATATAAAATTAAACAAAAG(+ACTCAC)GATCCATGGCAGTATCATTCACCCAAATATT NGG 10 8 17 8 24 0 100 5 10
    240604232704_1bly TCACAAGCAGGTGTTTATGTCTGAAATTGGAG(+ACTCAC)GTACCCATTATCTGAAAATTCCTCTCCCATA NGG 10 8 17 8 24 0 100 5 10
    240604232703_tch7 TACCTTATGGGAGAGGAATTTTCAGATAATGG(+ACTCAC)GTACCTCCAATTTCAGACATAAACACCTGCT NGG 10 8 17 8 24 0 100 5 10
    240604232701_zap7 CACTTTAAAACACTGTGGAGCCAGGAATAATG(+ACTCAC)GTACCCACCTGTAATCCCAGCACCTGGGAGA NGG 10 8 17 8 24 0 100 5 10
    240604232700_e92x TCCTGTCTCCCAGGTGCTGGGATTACAGGTGG(+ACTCAC)GTACCATTATTCCTGGCTCCACAGTGTTTTA NGG 10 8 17 8 24 0 100 5 10
    240604232658_zqz1 CATGTCTCTGGATGATACCTAGGCATCTCTAG(+ACTCAC)GTACCCAGAGATGGAGCCCTGGGAAGAAGAA NGG 10 8 17 8 24 0 100 5 10
    240604232656_nhxp GAACGTTCTTCTTCCCAGGGCTCCATCTCTGG(+ACTCAC)GTACCTAGAGATGCCTAGGTATCATCCAGAG NGG 10 8 17 8 24 0 100 5 10
    240604232655_js4p TGGCAAGAATTACATATTCTGTATTTTTTGTG(+ACTCAC)GTACCAAATGCACTGCCTTGTACTTAGCAAG NGG 10 8 17 8 24 0 100 5 10