Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604211003_6w4y ACAACAATCAAAGAAAATACAAAATGCAAAAG(+ACTCAC)GATCCTAACTCAAAACATCCAGGAAATCCAG NGG 10 8 17 8 24 0 100 5 10
    240604211001_5t38 AGACTGAGGGATCAAACCACATGATGCAGTTG(+ACTCAC)GATCCCTAAGGCCCCACCTCAGAATACTGTT NGG 10 8 17 8 24 0 100 5 10
    240604211000_5a4q AATGCAACAGTATTCTGAGGTGGGGCCTTAGG(+ACTCAC)GATCCAACTGCATCATGTGGTTTGATCCCTC NGG 10 8 17 8 24 0 100 5 10
    240604210958_nmw7 CTGGGAGAATGAGGGCCCACTGAACAAGCAGG(+ACTCAC)GATCCAATTCACACATCAAAGTCTGTAAAGA NGG 10 8 17 8 24 0 100 5 10
    240604210957_z8zv TCTTCTCTTTACAGACTTTGATGTGTGAATTG(+ACTCAC)GATCCCTGCTTGTTCAGTGGGCCCTCATTCT NGG 10 8 17 8 24 0 100 5 10
    240604210954_jari AAGAATAAGAAACCAAGAGTCGAGAGATCCAG(+ACTCAC)GATCCCATTCTGCGGCTGCTGTTTGCTGAGT NGG 10 8 17 8 24 0 100 5 10
    240604210952_l32y GGGTTACTCAGCAAACAGCAGCCGCAGAATGG(+ACTCAC)GATCCTGGATCTCTCGACTCTTGGTTTCTTA NGG 10 8 17 8 24 0 100 5 10
    240604210950_vo00 CCTTGTGCTCTGTCAGGAGCCATAGCTCCTGG(+ACTCAC)GATCCTTAAGATAGAAGTGGGTGACCCGTGT NGG 10 8 17 8 24 0 100 5 10
    240604210949_wsq2 AGTGTACACGGGTCACCCACTTCTATCTTAAG(+ACTCAC)GATCCCAGGAGCTATGGCTCCTGACAGAGCA NGG 10 8 17 8 24 0 100 5 10
    240604210947_3c9d AATCTTCTCTACCCAAATCCTCCTCATAAATG(+ACTCAC)GATCCATGATGACAGCTAAGAGAAAAAAAAT NGG 10 8 17 8 24 0 100 5 10