Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604071036_zizo73es ATCACAGAGAAAAATGGAAACAGGAACCCTCAGAAGATGAACAGGAACAAA(/C)GCACCAGTGCAGAGAGTGAGCCAGAACAAAAAAAAGTAAAAGCCAGAAG NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo65uj TGGACATGGCAGCGAGTCGAACAGCAGCTCTGAATCTTCTGAGAGTCAGTT(/A)GGAATCTGAGAGCGAATCAGCAGGTTCCAAATCCCAGCCAGTCCTCCCA NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo5vr7 GGGGTCAGGCGGTCAAACCGAAGCAGACAAGAACCATCGCGATTTAATATT(/C)AAGGAAGAGGTAAGGAAAAAATGTTTTAAGGGCATGCATTTAAACTCCC NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo5e64 CTTAATATTTAAGAATTAAAAGATGATGAGAAATAAGGACAAAAGCCAAGG(/A)GGAGGACAGTTCGCTACACAGCAATGCATCGAGGTATGAGCTATCAACT NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo5d7o GTGGACATGGCAGCGAGTCGAACAGCAGCTCTGAATCTTCTGAGAGTCAGG(/T)CGGAATCTGAGAGCGAATCAGCAGGTTCCAAATCCCAGCCAGTCCTCCC NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo5aaq TCTTCTGAGAGTCAGTCGGAATCTGAGAGCGAATCAGCAGGTTCCAAATCC(/T)CAGCCAGTCCTCCCAGAAGCCAAAGAGAAGCCAGCCTCTAAGAAGGAAC NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo3yzk GGAAGTGGACATGGCAGCGAGTCGAACAGCAGCTCTGAATCTTCTGAGAGG(/A)CAGTCGGAATCTGAGAGCGAATCAGCAGGTTCCAAATCCCAGCCAGTCC NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo2hj4 TGCAGAGAGTGAGCCAGAACAAAAAAAAGTAAAAGCCAGAAGACCTGTCCC(/T)CAGAAGGTGCACTGTTTGCTTAAGATCTCTACTTGGGATGAGCTTAATC NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo2fg4 TCTGAGAGCGAATCAGCAGGTTCCAAATCCCAGCCAGTCCTCCCAGAAGCC(/G)AAAGAGAAGCCAGCCTCTAAGAAGGAACGGATAGCTGATGTGAAGAAGG NGG 10 8 17 8 24 0 100 5 10
    240604071036_zizo2euv AAAATTACTTTGTTTTGCTTTTGATCACAGAGAAAAATGGAAACAGGAACC(/G)CTCAGAAGATGAACAGGAACAAGGCACCAGTGCAGAGAGTGAGCCAGAA NGG 10 8 17 8 24 0 100 5 10