Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613124655_8jb6 CTAAATTTGTAAATGGCAGCAGTATTATAAAG(+AGGACA)GATCCAAATGACCTAACAGGAACCAGAAAAA NGG 10 8 17 8 24 0 100 5 10
    240613124654_5523 CAATTTTTTTCTGGTTCCTGTTAGGTCATTTG(+AGGACA)GATCCTTTATAATACTGCTGCCATTTACAAA NGG 10 8 17 8 24 0 100 5 10
    240613124652_2sdw AGACTCATGGTTCACCAAGTTGGACTTCGGTG(+AGGACA)GTACCTGTCTTTTGGTCTGTTGTGGGCTCCC NGG 10 8 17 8 24 0 100 5 10
    240613124651_8mq5 AGAGAGGGAGCCCACAACAGACCAAAAGACAG(+AGGACA)GTACCACCGAAGTCCAACTTGGTGAACCATG NGG 10 8 17 8 24 0 100 5 10
    240613124648_um02 GAAACTGGAAGGACCCCACGCACCCTCCCAGG(+AGGACA)GTACCGCCCAGCCCTCTCATGTGTGATTCTG NGG 10 8 17 8 24 0 100 5 10
    240613124646_l5en AAATTCAGAATCACACATGAGAGGGCTGGGCG(+AGGACA)GTACCCTGGGAGGGTGCGTGGGGTCCTTCCA NGG 10 8 17 8 24 0 100 5 10
    240613124643_npyt GGTCTTCTGTTGACTTTGTCCTTTCCCCCCAG(+AGGACA)GTACCGAGTTACTCAGTCTGCTCTCCACTGT NGG 10 8 17 8 24 0 100 5 10
    240613124642_6mtk CATGGACAGTGGAGAGCAGACTGAGTAACTCG(+AGGACA)GTACCTGGGGGGAAAGGACAAAGTCAACAGA NGG 10 8 17 8 24 0 100 5 10
    240613124640_mz0r GTCAGCCGCGTGTTCGAGCGGTGTCACAGCCG(+AGGACA)GATCCTGCCCAGACTGCTGCCTGTGTGCTTT NGG 10 8 17 8 24 0 100 5 10
    240613124638_u217 AAGGGAAAGCACACAGGCAGCAGTCTGGGCAG(+AGGACA)GATCCGGCTGTGACACCGCTCGAACACGCGG NGG 10 8 17 8 24 0 100 5 10