Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613120622_d4uu TTTTTCAACAAATGAATTGCAAGACAGTGGAG(+AGGACA)GATCCGTCCATACATTAAGCCATGGCAACCA NGG 10 8 17 8 24 0 100 5 10
    240613120621_401a CACCTTTTCTACAGCAATTTTTAGTAATTATG(+AGGACA)GTACCAAGTTCCCACAAACCTTTGGGTGACT NGG 10 8 17 8 24 0 100 5 10
    240613120619_5sqz TACCCAGTCACCCAAAGGTTTGTGGGAACTTG(+AGGACA)GTACCATAATTACTAAAAATTGCTGTAGAAA NGG 10 8 17 8 24 0 100 5 10
    240613120617_7hum AGCCTCACCTGGTCCCTGGCCTTCAGCCTCTG(+AGGACA)GATCCCTGGGTGGGACCCAGAGAATCTCACG NGG 10 8 17 8 24 0 100 5 10
    240613120615_xr99 ATGAGCGTGAGATTCTCTGGGTCCCACCCAGG(+AGGACA)GATCCAGAGGCTGAAGGCCAGGGACCAGGTG NGG 10 8 17 8 24 0 100 5 10
    240613120614_e3ck GTTCTTCAGTAGTCTCACACTGGATTGGTCTG(+AGGACA)GATCCACACGGGTACTCACTTCAGGTCCTGA NGG 10 8 17 8 24 0 100 5 10
    240613120613_u87x TGTATTCAGGACCTGAAGTGAGTACCCGTGTG(+AGGACA)GATCCAGACCAATCCAGTGTGAGACTACTGA NGG 10 8 17 8 24 0 100 5 10
    240613120611_6tyl ACGGAGCAGCCGGAAACAAGGAGGCCTCGTGG(+AGGACA)GATCCTTTAGTGCCAAGCCTGGCGTCCCTGG NGG 10 8 17 8 24 0 100 5 10
    240613120609_qme8 CAAGTACAGACCGAGGCCCAGGAGAACGGGCG(+AGGACA)GTACCGTGTCCAGTCAGCTGCATGGTACTGT NGG 10 8 17 8 24 0 100 5 10
    240613120608_bng7 CGCTGACAGTACCATGCAGCTGACTGGACACG(+AGGACA)GTACCGCCCGTTCTCCTGGGCCTCGGTCTGT NGG 10 8 17 8 24 0 100 5 10