Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606212537_2wfr ACAAAGTTATTTTTAGGAGAGGAAAACAAAGG(+ATATAT)GTACCCATTGTGTTTACAGAGGGTAATGAGA NGG 10 8 17 8 24 0 100 5 10
    240606212535_g8tt AATGTTGGGAGATCCCAGAAGCTATAGTGAAG(+ATATAT)GTACCTGAAGGGCATTGCTAGTAGGATAGAG NGG 10 8 17 8 24 0 100 5 10
    240606212534_q5uy TCCCACTCTATCCTACTAGCAATGCCCTTCAG(+ATATAT)GTACCTTCACTATAGCTTCTGGGATCTCCCA NGG 10 8 17 8 24 0 100 5 10
    240606212532_jdxv CTACAGGGAGGGAATCAGGCCACACTGCTGAG(+ATATAT)GTACCCTGTGGTTCCTTTATAAGCTTCTTGT NGG 10 8 17 8 24 0 100 5 10
    240606212530_79me ACCAAACAAGAAGCTTATAAAGGAACCACAGG(+ATATAT)GTACCTCAGCAGTGTGGCCTGATTCCCTCCC NGG 10 8 17 8 24 0 100 5 10
    240606212528_f1sj TGACCTCAGCAAATCCTCCTTTTAACTCATGG(+ATATAT)GTACCCAGACTCGAACTATTTCACAATTCAC NGG 10 8 17 8 24 0 100 5 10
    240606212525_ntk2 TGGTTGTGAATTGTGAAATAGTTCGAGTCTGG(+ATATAT)GTACCCATGAGTTAAAAGGAGGATTTGCTGA NGG 10 8 17 8 24 0 100 5 10
    240606212523_jez0 AAACTTGGCTGACTTAGAACTGGAAGTTGCTG(+ATATAT)GTACCCAGGCTGAAATCTCTTGCGCTGGCTT NGG 10 8 17 8 24 0 100 5 10
    240606212521_zdqy TCAAGAAGCCAGCGCAAGAGATTTCAGCCTGG(+ATATAT)GTACCAGCAACTTCCAGTTCTAAGTCAGCCA NGG 10 8 17 8 24 0 100 5 10
    240606212518_agxn TGTGGATAACATATTATGTATATATGTAATGG(+ATATAT)GTACCAGGCCAGGTTTATATTTTTTTCTTTA NGG 10 8 17 8 24 0 100 5 10