Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606170103_tgvj GCCCTTCAGTCTGCTCCTCCACGGGGTGTTCG(+AAAAAA)GATCCCGATTGAGGCCCTGAATGCCCGCCAT NGG 10 8 17 8 24 0 100 5 10
    240606170101_q59i GAGGAATGGCGGGCATTCAGGGCCTCAATCGG(+AAAAAA)GATCCGAACACCCCGTGGAGGAGCAGACTGA NGG 10 8 17 8 24 0 100 5 10
    240606170100_2nya TAGCCCCCAGCATCACAGAAAATGACCTAGTG(+AAAAAA)GTACCCACCTGTGATCCCAGGCACCAGAAGA NGG 10 8 17 8 24 0 100 5 10
    240606170058_02t1 CCAGATCTTCTGGTGCCTGGGATCACAGGTGG(+AAAAAA)GTACCACTAGGTCATTTTCTGTGATGCTGGG NGG 10 8 17 8 24 0 100 5 10
    240606170055_urep TGCAGGTGGGGCCCACTAGATGGTTTCTGGGG(+AAAAAA)GATCCCCAGAACATGGGGTTCACCTATCCTA NGG 10 8 17 8 24 0 100 5 10
    240606170054_fhqr GTAGATAGGATAGGTGAACCCCATGTTCTGGG(+AAAAAA)GATCCCCCAGAAACCATCTAGTGGGCCCCAC NGG 10 8 17 8 24 0 100 5 10
    240606170052_yjk9 GGCACTTGAGAGGACACGTGCTTTCACACAGG(+AAAAAA)GTACCAAAATATCTTCTGGGGACACCCCAAC NGG 10 8 17 8 24 0 100 5 10
    240606170051_s0zh AAGGTGTTGGGGTGTCCCCAGAAGATATTTTG(+AAAAAA)GTACCCTGTGTGAAAGCACGTGTCCTCTCAA NGG 10 8 17 8 24 0 100 5 10
    240606170049_kpv6 ACCGAGGCTGCTGAGCTCTTCCAGCATGGAGG(+AAAAAA)GTACCATGGCCCGTAGGAGCCTGGGGTTCCT NGG 10 8 17 8 24 0 100 5 10
    240606170046_7a0s TTGCTAGGAACCCCAGGCTCCTACGGGCCATG(+AAAAAA)GTACCCTCCATGCTGGAAGAGCTCAGCAGCC NGG 10 8 17 8 24 0 100 5 10