Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606161913_4zyl TCAACCCTGAGGTGTCTGTCCACTATCTGAAG(+AAAAAA)GATCCAATTATTTCTAGCTCCCATCCCTCCT NGG 10 8 17 8 24 0 100 5 10
    240606161912_ezd3 AGGGTAGGAGGGATGGGAGCTAGAAATAATTG(+AAAAAA)GATCCTTCAGATAGTGGACAGACACCTCAGG NGG 10 8 17 8 24 0 100 5 10
    240606161911_aadq TCATCTGGGAAAGCACTGATTACACTTTACAG(+AAAAAA)GTACCTGTCAGCCCTGAGCTTCACAGACAAA NGG 10 8 17 8 24 0 100 5 10
    240606161909_yheu TCGTGTTTGTCTGTGAAGCTCAGGGCTGACAG(+AAAAAA)GTACCTGTAAAGTGTAATCAGTGCTTTCCCA NGG 10 8 17 8 24 0 100 5 10
    240606161908_0e90 ACTCAATGCAAACCTAACTGGCTATTAGCTCG(+AAAAAA)GATCCTTTGAATCTTTGAGTTACAAAAGCTC NGG 10 8 17 8 24 0 100 5 10
    240606161907_xixv TGAAAGAGCTTTTGTAACTCAAAGATTCAAAG(+AAAAAA)GATCCGAGCTAATAGCCAGTTAGGTTTGCAT NGG 10 8 17 8 24 0 100 5 10
    240606161905_ksz2 CAAGGTCCACTCAACTATTCTGGCTTCTGTGG(+AAAAAA)GTACCAGGCACACATGTGTAGTACATCCACA NGG 10 8 17 8 24 0 100 5 10
    240606161903_is17 GCATGTGTGGATGTACTACACATGTGTGCCTG(+AAAAAA)GTACCCACAGAAGCCAGAATAGTTGAGTGGA NGG 10 8 17 8 24 0 100 5 10
    240606161902_ykiu CTTTGTCGAAAGCTTTCATGTCAAAAGTAAAG(+AAAAAA)GTACCCATCGTGACCAGGATTGCTTAACTAT NGG 10 8 17 8 24 0 100 5 10
    240606161901_x88c CAGGCATAGTTAAGCAATCCTGGTCACGATGG(+AAAAAA)GTACCTTTACTTTTGACATGAAAGCTTTCGA NGG 10 8 17 8 24 0 100 5 10