Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606155913_7hua AAGATTCATGCTTCCATACCATGCAAAGAAGG(+AAAAAA)GTACCCTACTATGGTACTGTCACCTTAAGGA NGG 10 8 17 8 24 0 100 5 10
    240606155911_a2uf CGCTTTGTCCTTATGTGAATCTGCTATTGCGG(+AAAAAA)GATCCAAGCATTTGAGGAATATGTATATAGA NGG 10 8 17 8 24 0 100 5 10
    240606155910_o6q9 CATGTTCTATATACATATTCCTCAAATGCTTG(+AAAAAA)GATCCCGCAATAGCAGATTCACATAAGGACA NGG 10 8 17 8 24 0 100 5 10
    240606155909_al2f GTAGTGCCTGCAGATGCCAGAAGAGGGCGATG(+AAAAAA)GATCCTTTGGAAACAATGTTATTGGCAGCTT NGG 10 8 17 8 24 0 100 5 10
    240606155907_bmjm AACTCAAGCTGCCAATAACATTGTTTCCAAAG(+AAAAAA)GATCCATCGCCCTCTTCTGGCATCTGCAGGC NGG 10 8 17 8 24 0 100 5 10
    240606155906_a9ak TGCTATGTAGTCCCAGCTGGCCTCAAACTCAG(+AAAAAA)GATCCTCCTGCCTCAGCCTAGAATGGAACTC NGG 10 8 17 8 24 0 100 5 10
    240606155904_h0ws CTTAAGAGTTCCATTCTAGGCTGAGGCAGGAG(+AAAAAA)GATCCTGAGTTTGAGGCCAGCTGGGACTACA NGG 10 8 17 8 24 0 100 5 10
    240606155902_oj3p ATTTCAGTTTAGGAAGTGTGCCGTTTCATTAG(+AAAAAA)GTACCAAAGCACTTGCACTTTTGGGAACATA NGG 10 8 17 8 24 0 100 5 10
    240606155901_j70h ACACCTATGTTCCCAAAAGTGCAAGTGCTTTG(+AAAAAA)GTACCTAATGAAACGGCACACTTCCTAAACT NGG 10 8 17 8 24 0 100 5 10
    240606155859_kevg AGAAATTGCTGCACCAAGTCAATTGGCCGCTG(+AAAAAA)GATCCGGATGTATCAGGCTGGAAACATGACT NGG 10 8 17 8 24 0 100 5 10