Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606122720_llbz CAGATGATGGCTCTGGTGGTCATGTTAGGAGG(+AAAAAA)GATCCTGAGGTCCCTGCTCTTCACCATGCAG NGG 10 8 17 8 24 0 100 5 10
    240606122718_1bia AGTCTCTGCATGGTGAAGAGCAGGGACCTCAG(+AAAAAA)GATCCCTCCTAACATGACCACCAGAGCCATC NGG 10 8 17 8 24 0 100 5 10
    240606122716_zvc7 ATCACTCCTTAAATTTACTTCCACAATCCTGG(+AAAAAA)GTACCTTTTGCCAAGGGGCTCTCTCTTGGGA NGG 10 8 17 8 24 0 100 5 10
    240606122714_2qnj CTGAGTCCCAAGAGAGAGCCCCTTGGCAAAAG(+AAAAAA)GTACCCAGGATTGTGGAAGTAAATTTAAGGA NGG 10 8 17 8 24 0 100 5 10
    240606122713_momg ACACGGCCCACACCTAGCAGACTCCTCGGAAG(+AAAAAA)GATCCATAACAGCCTGGCCCAATGACCTGGA NGG 10 8 17 8 24 0 100 5 10
    240606122711_1lss GGACTTCCAGGTCATTGGGCCAGGCTGTTATG(+AAAAAA)GATCCTTCCGAGGAGTCTGCTAGGTGTGGGC NGG 10 8 17 8 24 0 100 5 10
    240606122710_jmly GTTGTGAGAGAAACTCTTCCACAACATTATGG(+AAAAAA)GATCCAAAAGGAGAGGACCCAAGGGGCTTAA NGG 10 8 17 8 24 0 100 5 10
    240606122708_zx0k CTCTTTTAAGCCCCTTGGGTCCTCTCCTTTTG(+AAAAAA)GATCCCATAATGTTGTGGAAGAGTTTCTCTC NGG 10 8 17 8 24 0 100 5 10
    240606122707_84go GGCATTCAGAGTTGGTCATTGTGGGTAAGAGG(+AAAAAA)GTACCGGCCCACCCGAAAGCCAGCATCCACG NGG 10 8 17 8 24 0 100 5 10
    240606122705_ivuq CTGCTCGTGGATGCTGGCTTTCGGGTGGGCCG(+AAAAAA)GTACCCTCTTACCCACAATGACCAACTCTGA NGG 10 8 17 8 24 0 100 5 10