Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606113135_xpu9 AGTTTGCTGAACATTTGACAGGGACAAGGAGG(+AAAAAA)GATCCATACGACAGCAGTTCCCGCTGTGGAA NGG 10 8 17 8 24 0 100 5 10
    240606113133_jipz CTTCATTCCACAGCGGGAACTGCTGTCGTATG(+AAAAAA)GATCCCTCCTTGTCCCTGTCAAATGTTCAGC NGG 10 8 17 8 24 0 100 5 10
    240606113131_eyv2 AGTTTGCTGAACATTTGACAGGGACAAGGAGG(+AAAAAA)GATCCATACGACAGCAGTTCCCGCTGTGGAA NGG 10 8 17 8 24 0 100 5 10
    240606113130_uyj2 CTTCATTCCACAGCGGGAACTGCTGTCGTATG(+AAAAAA)GATCCCTCCTTGTCCCTGTCAAATGTTCAGC NGG 10 8 17 8 24 0 100 5 10
    240606113128_dqyq GCATAGCCTTCTTCTGTGGGTTACCTCCTCAG(+AAAAAA)GTACCCAGGTCACATCCTGGTTAAGTTCTCA NGG 10 8 17 8 24 0 100 5 10
    240606113126_vxzd CAAGGTGAGAACTTAACCAGGATGTGACCTGG(+AAAAAA)GTACCTGAGGAGGTAACCCACAGAAGAAGGC NGG 10 8 17 8 24 0 100 5 10
    240606113125_s8l8 TTGAACTAGGCTCTGTCCGTGAAAGTGTGACG(+AAAAAA)GATCCTAATTTCAAGGGGACCTAAAACTTCA NGG 10 8 17 8 24 0 100 5 10
    240606113124_zmhh TTCCTTGAAGTTTTAGGTCCCCTTGAAATTAG(+AAAAAA)GATCCGTCACACTTTCACGGACAGAGCCTAG NGG 10 8 17 8 24 0 100 5 10
    240606113122_bqci TAAAGCCCCCTACTGCACCCCTGACCTGTGAG(+AAAAAA)GATCCATTTTTTTTTCTTTCCTTCCCCAAAT NGG 10 8 17 8 24 0 100 5 10
    240606113121_9fxm CCGAGATTTGGGGAAGGAAAGAAAAAAAAATG(+AAAAAA)GATCCTCACAGGTCAGGGGTGCAGTAGGGGG NGG 10 8 17 8 24 0 100 5 10