Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605024940_4bkm CAGGTGTCCAAATAGGCTAGAGAAAAGTATAG(+ACTCAC)GATCCCCTGGATCTGGAGTTATAGACAGTAG NGG 10 8 17 8 24 0 100 5 10
    240605024939_s6m7 GCCTGTCATGATGGTGCTGGGAAACAAACTTG(+ACTCAC)GATCCTCTGAAAGAGCAGTGAGTACTTTTAA NGG 10 8 17 8 24 0 100 5 10
    240605024937_ll01 AGTGGTTAAAAGTACTCACTGCTCTTTCAGAG(+ACTCAC)GATCCAAGTTTGTTTCCCAGCACCATCATGA NGG 10 8 17 8 24 0 100 5 10
    240605024936_xjil CTGGTGCTCAAGAAAGCTAGCAGAGGGCGCTG(+ACTCAC)GATCCCATGGAACTGGAGTTAGGGAGGGTGA NGG 10 8 17 8 24 0 100 5 10
    240605024934_q2kd GCTTATCACCCTCCCTAACTCCAGTTCCATGG(+ACTCAC)GATCCAGCGCCCTCTGCTAGCTTTCTTGAGC NGG 10 8 17 8 24 0 100 5 10
    240605024932_4jwr CCTCTAAGTGCCAAACAGACCATGCCCGCTGG(+ACTCAC)GATCCGGATCAGAAGAAAGCAGGATCGAGTG NGG 10 8 17 8 24 0 100 5 10
    240605024930_u1zf GGGCTCACTCGATCCTGCTTTCTTCTGATCCG(+ACTCAC)GATCCCAGCGGGCATGGTCTGTTTGGCACTT NGG 10 8 17 8 24 0 100 5 10
    240605024928_9cqr ATAACACTGCCAATGGTTAAGTCACAGTCCTG(+ACTCAC)GATCCTTAGCTATTACCATCCCTCAGAAAGC NGG 10 8 17 8 24 0 100 5 10
    240605024927_1ida TGGATGCTTTCTGAGGGATGGTAATAGCTAAG(+ACTCAC)GATCCAGGACTGTGACTTAACCATTGGCAGT NGG 10 8 17 8 24 0 100 5 10
    240605024926_bh7x CTGGGGTGCAGTGTGAGGGTGGGCGCTTGTAG(+ACTCAC)GATCCCAAACTGGTGGGGGTGAGAAAGGGCA NGG 10 8 17 8 24 0 100 5 10