Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604221603_cbit GCACACACTCCCAAAGAAGTTTCTGAGGAATG(+ACTCAC)GATCCTTGATTTTAAAACTGTAAGATCTTTT NGG 10 8 17 8 24 0 100 5 10
    240604221601_oc7k GGAGGAAAAGATCTTACAGTTTTAAAATCAAG(+ACTCAC)GATCCATTCCTCAGAAACTTCTTTGGGAGTG NGG 10 8 17 8 24 0 100 5 10
    240604221600_mc9z TACAGGGATGCCACCACCATTCCAGCATATTG(+ACTCAC)GATCCTGATTCTTATATCCTGTTTGTGTGTT NGG 10 8 17 8 24 0 100 5 10
    240604221558_ekx9 ACTGAAACACACAAACAGGATATAAGAATCAG(+ACTCAC)GATCCAATATGCTGGAATGGTGGTGGCATCC NGG 10 8 17 8 24 0 100 5 10
    240604221556_87iv AGGCACAGTATTTGGTTAAGCCTGAGTTTTGG(+ACTCAC)GTACCTTTTGTTACTGTTTTCAAAACCCTGA NGG 10 8 17 8 24 0 100 5 10
    240604221555_xhin GCAAGTCAGGGTTTTGAAAACAGTAACAAAAG(+ACTCAC)GTACCCAAAACTCAGGCTTAACCAAATACTG NGG 10 8 17 8 24 0 100 5 10
    240604221552_f4cq CCCAAGCCAAGCCTCAGCCTGGGCTTTCCCAG(+ACTCAC)GATCCTGTTAGTGAGCAGGGCTCAGCCACTC NGG 10 8 17 8 24 0 100 5 10
    240604221551_t2sp GGTCTGAGTGGCTGAGCCCTGCTCACTAACAG(+ACTCAC)GATCCTGGGAAAGCCCAGGCTGAGGCTTGGC NGG 10 8 17 8 24 0 100 5 10
    240604221550_ln3d TGCAGCCACTGCCAGAGCTGACCTTGACTGGG(+ACTCAC)GATCCTTGTCTGGGACCCCATCACGCTGGTC NGG 10 8 17 8 24 0 100 5 10
    240604221548_o38u TAGAGGACCAGCGTGATGGGGTCCCAGACAAG(+ACTCAC)GATCCCCAGTCAAGGTCAGCTCTGGCAGTGG NGG 10 8 17 8 24 0 100 5 10