Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604193327_irc4 TGAGTGTGACCTCAAAGCCCCCGTGTGCTCGG(+ACTCAC)GATCCAGCAGGCCATATTAGTCATTTGGCAG NGG 10 8 17 8 24 0 100 5 10
    240604193326_qwuf TTAACTTTTCCCAGGGGTCCAGCACCTCACCG(+ACTCAC)GATCCACCTAAGGGCGCTTACTAAAAGGTGG NGG 10 8 17 8 24 0 100 5 10
    240604193324_73f3 AGATGCCACCTTTTAGTAAGCGCCCTTAGGTG(+ACTCAC)GATCCGGTGAGGTGCTGGACCCCTGGGAAAA NGG 10 8 17 8 24 0 100 5 10
    240604193322_es8o AAGAAATCAGCAATCAGTAGTCCTCCCCTGAG(+ACTCAC)GATCCTCGGAACCTCCCTCTAGGCAAATCAA NGG 10 8 17 8 24 0 100 5 10
    240604193320_or2l GGGGCTTGATTTGCCTAGAGGGAGGTTCCGAG(+ACTCAC)GATCCTCAGGGGAGGACTACTGATTGCTGAT NGG 10 8 17 8 24 0 100 5 10
    240604193319_22rr TAGGGAAGCTGGAGAGCAGGTGTGAACAGAAG(+ACTCAC)GATCCCTAGACTTCAGCAGCAGGTTCGCAGG NGG 10 8 17 8 24 0 100 5 10
    240604193318_oeya GGAGGCCTGCGAACCTGCTGCTGAAGTCTAGG(+ACTCAC)GATCCTTCTGTTCACACCTGCTCTCCAGCTT NGG 10 8 17 8 24 0 100 5 10
    240604193317_5m9q GGGGTTGTCGCCGCTTTTACGTGAGCGGCGTG(+ACTCAC)GATCCACGCAGCGATGCCGTCTACTTTGAGA NGG 10 8 17 8 24 0 100 5 10
    240604193315_b48f ACCGCTCTCAAAGTAGACGGCATCGCTGCGTG(+ACTCAC)GATCCACGCCGCTCACGTAAAAGCGGCGACA NGG 10 8 17 8 24 0 100 5 10
    240604193314_ioqa TCCCTGCTCAAATTATGCCTCTTAGGATAAAG(+ACTCAC)GTACCCAGCATTTTGTTTTGGGTGTGAAAAT NGG 10 8 17 8 24 0 100 5 10