Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613153053_0p6e GCTGAGGGATGGCTCAGGGGTTAAGAGAACTG(+AGGACA)GATCCTCTGCCACAGAGCCTTAGTTCCATTC NGG 10 8 17 8 24 0 100 5 10
    240613153052_lcid ACTGGGAATGGAACTAAGGCTCTGTGGCAGAG(+AGGACA)GATCCAGTTCTCTTAACCCCTGAGCCATCCC NGG 10 8 17 8 24 0 100 5 10
    240613153051_3jpt CCCTGCTTTGAGCTCTGCTACCTATGGGAGGG(+AGGACA)GATCCACAGGTGCCCATCCTCCTCCCTAGAA NGG 10 8 17 8 24 0 100 5 10
    240613153049_b1nn TGAAGTTCTAGGGAGGAGGATGGGCACCTGTG(+AGGACA)GATCCCCTCCCATAGGTAGCAGAGCTCAAAG NGG 10 8 17 8 24 0 100 5 10
    240613153047_ieit CTGCAGGTGCTGGTCCTGCAAAGTCCAAGCGG(+AGGACA)GTACCCCTTCCTGGGTGATGACCCTGTGCAG NGG 10 8 17 8 24 0 100 5 10
    240613153045_eynt GCATTCTGCACAGGGTCATCACCCAGGAAGGG(+AGGACA)GTACCCGCTTGGACTTTGCAGGACCAGCACC NGG 10 8 17 8 24 0 100 5 10
    240613153044_5w7f GTTGTGGGGTTCGTAGCAGTCCCAGGATCCTG(+AGGACA)GTACCTAAGGCAGCTGGGACCCAGAACAGAG NGG 10 8 17 8 24 0 100 5 10
    240613153042_x0k2 GGAAACTCTGTTCTGGGTCCCAGCTGCCTTAG(+AGGACA)GTACCAGGATCCTGGGACTGCTACGAACCCC NGG 10 8 17 8 24 0 100 5 10
    240613153039_t12u ACATAGAGTTGTGGGGTTCGTAGCAGTCCCAG(+AGGACA)GATCCTGGTACCTAAGGCAGCTGGGACCCAG NGG 10 8 17 8 24 0 100 5 10
    240613153038_tmz1 CTGTTCTGGGTCCCAGCTGCCTTAGGTACCAG(+AGGACA)GATCCTGGGACTGCTACGAACCCCACAACTC NGG 10 8 17 8 24 0 100 5 10