Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613133900_j3ha GAGGGACCAGCACTAGGAGAATGTGTGCCCCG(+AGGACA)GATCCCACCAGGCCCACAGCCAAGCATAAGC NGG 10 8 17 8 24 0 100 5 10
    240613133858_qb7c CTCTTAGTTCAAGGAGGTGATGATGGGTGGGG(+AGGACA)GATCCGGAGGGCTTCTAAGATGTGCTTGGAA NGG 10 8 17 8 24 0 100 5 10
    240613133856_zg2q CGAGATTCCAAGCACATCTTAGAAGCCCTCCG(+AGGACA)GATCCCCCACCCATCATCACCTCCTTGAACT NGG 10 8 17 8 24 0 100 5 10
    240613133854_4s1x TGTCCGAGTCCATGGAGAGAGGCTGTGCTAGG(+AGGACA)GTACCCAGCCAAAGACTCGCCTTTGAAGCCT NGG 10 8 17 8 24 0 100 5 10
    240613133852_5s2t ACCAGAGGCTTCAAAGGCGAGTCTTTGGCTGG(+AGGACA)GTACCCTAGCACAGCCTCTCTCCATGGACTC NGG 10 8 17 8 24 0 100 5 10
    240613133851_pfa3 GGCGTGGCCCCATCTTTGGGAACCTGGTGTGG(+AGGACA)GATCCAGGCAAATCTGGAAGGCAAAAAGTTC NGG 10 8 17 8 24 0 100 5 10
    240613133848_mul6 CCTATGAACTTTTTGCCTTCCAGATTTGCCTG(+AGGACA)GATCCCACACCAGGTTCCCAAAGATGGGGCC NGG 10 8 17 8 24 0 100 5 10
    240613133846_tid1 AGACTGCACCTTTGTGATTCCTTTTCTCCCGG(+AGGACA)GATCCACCTGGGACAGTCAGTCTCAGAAGGG NGG 10 8 17 8 24 0 100 5 10
    240613133844_amdc GCTGACCCTTCTGAGACTGACTGTCCCAGGTG(+AGGACA)GATCCCGGGAGAAAAGGAATCACAAAGGTGC NGG 10 8 17 8 24 0 100 5 10
    240613133843_8dr6 CCAGAGCCACTTGATCTGATACAACAGAGCGG(+AGGACA)GTACCACGTTGGCTTGGGGGTGGGTGGGGGA NGG 10 8 17 8 24 0 100 5 10