Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613184224_5ozr GGTCTGGGTACAGCTTTTCTTCTCTCCAACTG(+AGGACA)GTACCTTTCTTGCCGGTGAACTGCAGGCTCT NGG 10 8 17 8 24 0 100 5 10
    240613184222_hltp TCCAAAGGTCTGCCCACCTCCTCCAGGGCAAG(+AGGACA)GATCCAATGTCACATCTAAGCATCTGTCCTA NGG 10 8 17 8 24 0 100 5 10
    240613184221_ncic ACCTTTAGGACAGATGCTTAGATGTGACATTG(+AGGACA)GATCCTTGCCCTGGAGGAGGTGGGCAGACCT NGG 10 8 17 8 24 0 100 5 10
    240613184220_kxuf GCTGGCCCATTTCATTTTGTCAGGGAGCTTAG(+AGGACA)GTACCTGTGTCCTTGTTTTCCTAAAGCTGAT NGG 10 8 17 8 24 0 100 5 10
    240613184218_u44i GTGGGATCAGCTTTAGGAAAACAAGGACACAG(+AGGACA)GTACCTAAGCTCCCTGACAAAATGAAATGGG NGG 10 8 17 8 24 0 100 5 10
    240613184217_ph6j AGATGAGAGACATCAAGGCATAGTAATTTGAG(+AGGACA)GATCCCATAAAGCATTTCTGAGGTGGCCATG NGG 10 8 17 8 24 0 100 5 10
    240613184215_5qfj CCTGGCATGGCCACCTCAGAAATGCTTTATGG(+AGGACA)GATCCTCAAATTACTATGCCTTGATGTCTCT NGG 10 8 17 8 24 0 100 5 10
    240613184214_9vef AAAAGGCATGGGGCAGGGTACACTGGGGTTTG(+AGGACA)GATCCACTTTCCTACCTCCTTCTGCTTTGCT NGG 10 8 17 8 24 0 100 5 10
    240613184211_dgd3 ATGTGAGCAAAGCAGAAGGAGGTAGGAAAGTG(+AGGACA)GATCCAAACCCCAGTGTACCCTGCCCCATGC NGG 10 8 17 8 24 0 100 5 10
    240613184209_wefn TTGTTGTATTTGAACATTGTAAAGTGTGGGTG(+AGGACA)GTACCTTAAACTGAATATGTGAAGAATCCAG NGG 10 8 17 8 24 0 100 5 10