Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613183505_o63y GAATACCTGCACAGACACACTCACAGAGTTGG(+AGGACA)GATCCATCTTAAATTTTCTCAGAGGAGTCTT NGG 10 8 17 8 24 0 100 5 10
    240613183504_6luv CTCTAGTGGAGGCTTGGTATTAGAAAAGTCTG(+AGGACA)GTACCCCTTAGGCACCTTTCTTGGCATATGA NGG 10 8 17 8 24 0 100 5 10
    240613183502_ysk4 TAACCTCATATGCCAAGAAAGGTGCCTAAGGG(+AGGACA)GTACCAGACTTTTCTAATACCAAGCCTCCAC NGG 10 8 17 8 24 0 100 5 10
    240613183501_v40m GAGCCCTTTGTACTCTATAAACAAAATGCTAG(+AGGACA)GATCCCATCTTAATATTTTTTAAAAGTAATT NGG 10 8 17 8 24 0 100 5 10
    240613183459_q3sf TTTTAAATTACTTTTAAAAAATATTAAGATGG(+AGGACA)GATCCTAGCATTTTGTTTATAGAGTACAAAG NGG 10 8 17 8 24 0 100 5 10
    240613183458_5m63 TGTAAGATATGGGGACACAATACATTTCACTG(+AGGACA)GTACCATGAGGAAGGGTGTTAACACTAAATT NGG 10 8 17 8 24 0 100 5 10
    240613183457_h2sy ACTCCAATTTAGTGTTAACACCCTTCCTCATG(+AGGACA)GTACCAGTGAAATGTATTGTGTCCCCATATC NGG 10 8 17 8 24 0 100 5 10
    240613183454_xfll CTCACCCTGAGAAAGGTTTGGTGCAACCCTGG(+AGGACA)GATCCCTAACACCAAGCACTACTGCCTGCTG NGG 10 8 17 8 24 0 100 5 10
    240613183452_h9gp TTAGCCAGCAGGCAGTAGTGCTTGGTGTTAGG(+AGGACA)GATCCCAGGGTTGCACCAAACCTTTCTCAGG NGG 10 8 17 8 24 0 100 5 10
    240613183451_ytnw CTCTAGAGAACCCTGACTAATAACAGAAGTTG(+AGGACA)GTACCAGGAGTGGTTCTAGAGTAACAGAAGT NGG 10 8 17 8 24 0 100 5 10