Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607001120_sod2 CTTCAAGCTCTGATTAGGAGTAAAGACCACAG(+ATATAT)GATCCCAAGATCCCTGCATCTTTCTAGGCAT NGG 10 8 17 8 24 0 100 5 10
    240607001119_t45c TACAATGGGGGGGGGGGGGGGATGACAGAGTG(+ATATAT)GATCCTTAAAATGTTAAAGGAGTTGTGGCTT NGG 10 8 17 8 24 0 100 5 10
    240607001117_paaa CAGTTAAGCCACAACTCCTTTAACATTTTAAG(+ATATAT)GATCCACTCTGTCATCCCCCCCCCCCCCCCA NGG 10 8 17 8 24 0 100 5 10
    240607001115_ojpc TCCCTGACTTTTTATTAGTATGAAGAAGGGAG(+ATATAT)GATCCAGAGCATAGTTAGGCAAGCACTTCAC NGG 10 8 17 8 24 0 100 5 10
    240607001114_dla0 GCTCAGTGAAGTGCTTGCCTAACTATGCTCTG(+ATATAT)GATCCTCCCTTCTTCATACTAATAAAAAGTC NGG 10 8 17 8 24 0 100 5 10
    240607001113_w7km TTTTTTTTTTTTTTTAATTCTTAGTTGTTTGG(+ATATAT)GATCCTTAAGCATGCAAAAGCTTTGAACAGG NGG 10 8 17 8 24 0 100 5 10
    240607001111_d7bp ACCCTCCTGTTCAAAGCTTTTGCATGCTTAAG(+ATATAT)GATCCCAAACAACTAAGAATTAAAAAAAAAA NGG 10 8 17 8 24 0 100 5 10
    240607001110_m5ow TCTACAAGCAGCTGCTCTAGCAGTAAGGGCAG(+ATATAT)GTACCATGCTGGTGAGGAGAAAGGGGCAGGG NGG 10 8 17 8 24 0 100 5 10
    240607001108_qrpw GGCAGCCCTGCCCCTTTCTCCTCACCAGCATG(+ATATAT)GTACCTGCCCTTACTGCTAGAGCAGCTGCTT NGG 10 8 17 8 24 0 100 5 10
    240607001107_u0cr GTCAAAATCCTTTCTTGGTTATGTGCCTCTGG(+ATATAT)GATCCCTACTGGACACTGCGAGGGTACGTGG NGG 10 8 17 8 24 0 100 5 10