Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606163813_nt70 GGCCCTGGGTGGAGGAGGGCTTAGCTTCACTG(+AAAAAA)GATCCCAGGCCCAGGCTCGATGCATGAACTC NGG 10 8 17 8 24 0 100 5 10
    240606163812_t13u CCCTGAGGGATCCTGGCCCCTGCTGAGGACTG(+AAAAAA)GTACCTATTTCTCATTAAAGTGGCTTTGATC NGG 10 8 17 8 24 0 100 5 10
    240606163811_t6jm TTCCTGATCAAAGCCACTTTAATGAGAAATAG(+AAAAAA)GTACCAGTCCTCAGCAGGGGCCAGGATCCCT NGG 10 8 17 8 24 0 100 5 10
    240606163809_rgoo TTCCACCTCTTATCAGGAGCTGCCCTGGAAAG(+AAAAAA)GATCCGGTCATGCTGCCTGCCTCTTTTCATC NGG 10 8 17 8 24 0 100 5 10
    240606163808_hwmq TGACAGATGAAAAGAGGCAGGCAGCATGACCG(+AAAAAA)GATCCTTTCCAGGGCAGCTCCTGATAAGAGG NGG 10 8 17 8 24 0 100 5 10
    240606163805_cv5s GAGTCAATAATGTGAGGGTGGTGGGGTGGGGG(+AAAAAA)GATCCTCAGTACAAGAAAACTGAATAGTGTT NGG 10 8 17 8 24 0 100 5 10
    240606163804_erv2 TCCAAAACACTATTCAGTTTTCTTGTACTGAG(+AAAAAA)GATCCCCCCACCCCACCACCCTCACATTATT NGG 10 8 17 8 24 0 100 5 10
    240606163803_8y17 AAGGGTCTCTCACTAAAACTGAAGCTACGTTG(+AAAAAA)GTACCCCAGAACGCCCCAGTCGTTCTCTTGC NGG 10 8 17 8 24 0 100 5 10
    240606163801_x9l5 AACGGGCAAGAGAACGACTGGGGCGTTCTGGG(+AAAAAA)GTACCAACGTAGCTTCAGTTTTAGTGAGAGA NGG 10 8 17 8 24 0 100 5 10
    240606163759_5pg2 CTCAGTTGGCAGAGTGCTAGCCTAGATGCATG(+AAAAAA)GATCCTTGGGCTCAGGCCTCAGCACTGAACT NGG 10 8 17 8 24 0 100 5 10