Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606154636_cjn4 ACCACATGGTGACTCACAACCATCTGTAATGG(+AAAAAA)GATCCGGTGCCCTCTTCTGGCTTTCAGGCAT NGG 10 8 17 8 24 0 100 5 10
    240606154635_y17v TGCAACTATATTTTTAAAAAGTACAAAACTAG(+AAAAAA)GATCCTTACCTTCTGAATTAAAAATACAATT NGG 10 8 17 8 24 0 100 5 10
    240606154634_6bp7 TGATGAATTGTATTTTTAATTCAGAAGGTAAG(+AAAAAA)GATCCTAGTTTTGTACTTTTTAAAAATATAG NGG 10 8 17 8 24 0 100 5 10
    240606154632_tuai ACCACATGGTGGCTCACAACCATCTGTAATGG(+AAAAAA)GATCCGATATCCTCTTCTGGTGTGTCTGAAG NGG 10 8 17 8 24 0 100 5 10
    240606154631_t7x0 ACTGTCTTCAGACACACCAGAAGAGGATATCG(+AAAAAA)GATCCCATTACAGATGGTTGTGAGCCACCAT NGG 10 8 17 8 24 0 100 5 10
    240606154629_1a3d GAGAGGTGGCCTGGGACTCTGTCCTCCATATG(+AAAAAA)GTACCTCAGGAATGCACATCCCTACGATACA NGG 10 8 17 8 24 0 100 5 10
    240606154628_2r02 GTGACTGTATCGTAGGGATGTGCATTCCTGAG(+AAAAAA)GTACCATATGGAGGACAGAGTCCCAGGCCAC NGG 10 8 17 8 24 0 100 5 10
    240606154627_268m CTTATTCTTTAGGCCTTGCTGTAGAGTCTCTG(+AAAAAA)GATCCCTTACACAGCCCGGTATGTACCAACA NGG 10 8 17 8 24 0 100 5 10
    240606154625_07wo GGGGCTGTTGGTACATACCGGGCTGTGTAAGG(+AAAAAA)GATCCAGAGACTCTACAGCAAGGCCTAAAGA NGG 10 8 17 8 24 0 100 5 10
    240606154623_nvng TCACTAAAGTCAAACTGTCTTGCATCCTGCGG(+AAAAAA)GTACCATGAAGCAGCTGGGTGTGCATCCCTT NGG 10 8 17 8 24 0 100 5 10