Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606143637_olcq GAGTGTGATCACCAACCACATCCGCTCCTAAG(+AAAAAA)GATCCACATCTTATCCTGCAGGTAACAGACA NGG 10 8 17 8 24 0 100 5 10
    240606143636_dvk5 CACCGTGTCTGTTACCTGCAGGATAAGATGTG(+AAAAAA)GATCCTTAGGAGCGGATGTGGTTGGTGATCA NGG 10 8 17 8 24 0 100 5 10
    240606143634_e193 AAAAACCCATCAGCCTGAGGCTTTTGCCTTGG(+AAAAAA)GTACCTGCCCATTTTATAGTTAAATAACACT NGG 10 8 17 8 24 0 100 5 10
    240606143632_8nt6 ACATTAGTGTTATTTAACTATAAAATGGGCAG(+AAAAAA)GTACCCAAGGCAAAAGCCTCAGGCTGATGGG NGG 10 8 17 8 24 0 100 5 10
    240606143631_t99i TGCTTCTGCCAAATGACTAATATGGCCTGCTG(+AAAAAA)GATCCCAAGCACACGAGGGCTTTGAGGTCAC NGG 10 8 17 8 24 0 100 5 10
    240606143629_rq79 TGAGTGTGACCTCAAAGCCCTCGTGTGCTTGG(+AAAAAA)GATCCAGCAGGCCATATTAGTCATTTGGCAG NGG 10 8 17 8 24 0 100 5 10
    240606143627_0di3 CTAGGCCAGAGAGAAGGTGGGCCTGAGTCCAG(+AAAAAA)GATCCAACCCTCCTAGGTGGCATCACCAGGG NGG 10 8 17 8 24 0 100 5 10
    240606143626_qpv4 CGCCTCCCTGGTGATGCCACCTAGGAGGGTTG(+AAAAAA)GATCCTGGACTCAGGCCCACCTTCTCTCTGG NGG 10 8 17 8 24 0 100 5 10
    240606143624_jdn5 ATAATGGCCCATCTTTTGGGATACGGTCCTTG(+AAAAAA)GATCCACTCTTATTTCATCCCCAGTCCTTGT NGG 10 8 17 8 24 0 100 5 10
    240606143623_a43p CCTGCACAAGGACTGGGGATGAAATAAGAGTG(+AAAAAA)GATCCAAGGACCGTATCCCAAAAGATGGGCC NGG 10 8 17 8 24 0 100 5 10