Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606142502_tbzx GCTGCTGTTCCTGCGGAAGCTGAGTGCAGCAG(+AAAAAA)GATCCTGAGGGGTGAGCAGGGGTTGAGGGCT NGG 10 8 17 8 24 0 100 5 10
    240606142501_j906 CTGCTGTCCCGACTCCTGCACAGGCTGAGGTG(+AAAAAA)GTACCAAGATGGCCATCTGTGGCTACTCACC NGG 10 8 17 8 24 0 100 5 10
    240606142459_2q77 TTGCCGGTGAGTAGCCACAGATGGCCATCTTG(+AAAAAA)GTACCACCTCAGCCTGTGCAGGAGTCGGGAC NGG 10 8 17 8 24 0 100 5 10
    240606142458_culv AGGGGACGGCCAGACAGTACAGTCACCCATAG(+AAAAAA)GATCCCCAGAGACATAAAGGGTATCAGGACA NGG 10 8 17 8 24 0 100 5 10
    240606142456_0ypq CTTTCTGTCCTGATACCCTTTATGTCTCTGGG(+AAAAAA)GATCCTATGGGTGACTGTACTGTCTGGCCGT NGG 10 8 17 8 24 0 100 5 10
    240606142454_uhdv CACCACCGGGATCTGTCCTGCAAAGTTGAAGG(+AAAAAA)GATCCTTTGGTGCCAGCTGGTGTTTGGAAGT NGG 10 8 17 8 24 0 100 5 10
    240606142452_w5f4 TTCCTACTTCCAAACACCAGCTGGCACCAAAG(+AAAAAA)GATCCCTTCAACTTTGCAGGACAGATCCCGG NGG 10 8 17 8 24 0 100 5 10
    240606142450_of5a CCTCTCATGGCGCTGCTACCGATGACTCCCAG(+AAAAAA)GATCCCAGACGTTCAGAACCAGATTCTCATT NGG 10 8 17 8 24 0 100 5 10
    240606142448_y8o7 AAAGCAATGAGAATCTGGTTCTGAACGTCTGG(+AAAAAA)GATCCTGGGAGTCATCGGTAGCAGCGCCATG NGG 10 8 17 8 24 0 100 5 10
    240606142446_8q7v CCTGGCAGGCAGGTGGGCGGTCTGCCTCCAGG(+AAAAAA)GATCCTGGGACCCTGATGGCGATCGTCCTGT NGG 10 8 17 8 24 0 100 5 10