Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606131858_8s2i GAAGCCTGAAGTTCACCCCCAGGCAGAAGGTG(+AAAAAA)GTACCCTGGACATCCAGTCTGCCTCAGAGCA NGG 10 8 17 8 24 0 100 5 10
    240606131856_t07y TCCTCTGCTCTGAGGCAGACTGGATGTCCAGG(+AAAAAA)GTACCACCTTCTGCCTGGGGGTGAACTTCAG NGG 10 8 17 8 24 0 100 5 10
    240606131854_74ps GACGGGAGTTGGTTCTCTCCTTCCACTGTGTG(+AAAAAA)GATCCTGAAGAGCAAGCTCAGGACCTCAGGT NGG 10 8 17 8 24 0 100 5 10
    240606131853_456k CATCCACCTGAGGTCCTGAGCTTGCTCTTCAG(+AAAAAA)GATCCACACAGTGGAAGGAGAGAACCAACTC NGG 10 8 17 8 24 0 100 5 10
    240606131852_bvop AGAGGCATAGCATAATTGGGTGTTTACTAAGG(+AAAAAA)GATCCCTGGTGGTGGGTTACACAATAGACTG NGG 10 8 17 8 24 0 100 5 10
    240606131849_4k5h AATTCCAGTCTATTGTGTAACCCACCACCAGG(+AAAAAA)GATCCCTTAGTAAACACCCAATTATGCTATG NGG 10 8 17 8 24 0 100 5 10
    240606131848_7afy CGAGTGGTCATGCCCTCCTTTTCATTCATCTG(+AAAAAA)GTACCAACACCAGAGGGAGAGCATACAGGAC NGG 10 8 17 8 24 0 100 5 10
    240606131847_wzcd GGGAAGTCCTGTATGCTCTCCCTCTGGTGTTG(+AAAAAA)GTACCAGATGAATGAAAAGGAGGGCATGACC NGG 10 8 17 8 24 0 100 5 10
    240606131845_x77w TGTGGAAGAAGCTTGCTGCCTGAGGGCTGAGG(+AAAAAA)GATCCATAGGATCTCAATGAGGCTTGCAGTT NGG 10 8 17 8 24 0 100 5 10
    240606131842_26yj CATGTAACTGCAAGCCTCATTGAGATCCTATG(+AAAAAA)GATCCCTCAGCCCTCAGGCAGCAAGCTTCTT NGG 10 8 17 8 24 0 100 5 10