Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240606130921_bds8 ACCAACTTTTAGGTTGTGATACTTTCCTCCTG(+AAAAAA)GTACCTGGGGGGAGGGGAGTATGCAGTTGGT NGG 10 8 17 8 24 0 100 5 10
    240606130918_ngf9 AAAGCACCAACTGCATACTCCCCTCCCCCCAG(+AAAAAA)GTACCAGGAGGAAAGTATCACAACCTAAAAG NGG 10 8 17 8 24 0 100 5 10
    240606130917_eesh TTTCTTAGCTCTAGACCCTTCTGGTCTCTTTG(+AAAAAA)GTACCTAGAACAATGTTTTATATTTACAGCT NGG 10 8 17 8 24 0 100 5 10
    240606130915_p5cq TAAACAGCTGTAAATATAAAACATTGTTCTAG(+AAAAAA)GTACCAAAGAGACCAGAAGGGTCTAGAGCTA NGG 10 8 17 8 24 0 100 5 10
    240606130914_761u CAGGGTGAGGTGCCTGCTGGGCACAGACTGTG(+AAAAAA)GATCCACTGTCTTCCTAGAGCAGGCCACATG NGG 10 8 17 8 24 0 100 5 10
    240606130913_fu1a AAGGCCATGTGGCCTGCTCTAGGAAGACAGTG(+AAAAAA)GATCCACAGTCTGTGCCCAGCAGGCACCTCA NGG 10 8 17 8 24 0 100 5 10
    240606130912_d5du CTCTACCTCCCAGTTTCTGGGGTTACAAGTAG(+AAAAAA)GTACCATCACACACAATTTCTGTACTTTAAG NGG 10 8 17 8 24 0 100 5 10
    240606130911_zbdw CCTACCTTAAAGTACAGAAATTGTGTGTGATG(+AAAAAA)GTACCTACTTGTAACCCCAGAAACTGGGAGG NGG 10 8 17 8 24 0 100 5 10
    240606130909_tzy7 CAGACTTGGAGTCTCAGGAGTGTCCAACCAGG(+AAAAAA)GTACCAAGTCCCAGGCCTGTGACCTGGGTTG NGG 10 8 17 8 24 0 100 5 10
    240606130907_vohs GGATCCAACCCAGGTCACAGGCCTGGGACTTG(+AAAAAA)GTACCCTGGTTGGACACTCCTGAGACTCCAA NGG 10 8 17 8 24 0 100 5 10