Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605130941_nmi7 TAAATCGTTAATCTGATCCTGATTTAACTTTG(+CAGTGT)GTACCTAGTATCTGTCTAGAAAAGTGTCCAC NGG 10 8 17 8 24 0 100 5 10
    240605130939_qkw3 TGCTCCTAGTCACCCATTGGATGCAGCACAGG(+CAGTGT)GTACCCAATGAAGGAGCTAAAGAAAGTACCT NGG 10 8 17 8 24 0 100 5 10
    240605130937_fleh TCTTTAGGTACTTTCTTTAGCTCCTTCATTGG(+CAGTGT)GTACCCTGTGCTGCATCCAATGGGTGACTAG NGG 10 8 17 8 24 0 100 5 10
    240605130936_t5x4 CATAGTGAGGAAATGAAATGATGCACTTAATG(+CAGTGT)GTACCATCTCACTGTCAAGATAAAATACCCA NGG 10 8 17 8 24 0 100 5 10
    240605130935_j1fd GCAGCTGGGTATTTTATCTTGACAGTGAGATG(+CAGTGT)GTACCATTAAGTGCATCATTTCATTTCCTCA NGG 10 8 17 8 24 0 100 5 10
    240605130934_q9oj ATTGTTGAAAGTCAAACTTATTGTGAGTTAAG(+CAGTGT)GATCCATAAAATTCTTCTGTTGCAGTTAGGG NGG 10 8 17 8 24 0 100 5 10
    240605130932_t2ra AGTATCCCTAACTGCAACAGAAGAATTTTATG(+CAGTGT)GATCCTTAACTCACAATAAGTTTGACTTTCA NGG 10 8 17 8 24 0 100 5 10
    240605130931_na0z AATCCACTCAGGACCACACAGTAACACATGTG(+CAGTGT)GATCCTGGCACCCCCACTTCTGCCTCCAACT NGG 10 8 17 8 24 0 100 5 10
    240605130929_y46f CTGGAAGTTGGAGGCAGAAGTGGGGGTGCCAG(+CAGTGT)GATCCACATGTGTTACTGTGTGGTCCTGAGT NGG 10 8 17 8 24 0 100 5 10
    240605130928_9n5s CTCTACAAAGATGTGATGCTGGAGATCTTCAG(+CAGTGT)GATCCTCACTACTATAGGCTACACCTGGGAA NGG 10 8 17 8 24 0 100 5 10