Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240605003118_n5v1 CCTCCTGGGTAAGAAAGACACAGGTGAGCAGG(+ACTCAC)GTACCAACAGCAGGCTGCATGCATTCCAGGT NGG 10 8 17 8 24 0 100 5 10
    240605003116_7ile TAAACCCAGTCCTTAGGAGACTGAGGCAGGAG(+ACTCAC)GATCCCTGTGAGTTCCAGGCCAGTCTAAGCT NGG 10 8 17 8 24 0 100 5 10
    240605003114_pt9l TCTGCAGCTTAGACTGGCCTGGAACTCACAGG(+ACTCAC)GATCCTCCTGCCTCAGTCTCCTAAGGACTGG NGG 10 8 17 8 24 0 100 5 10
    240605003113_enk4 TACCCAGCCTTTCAAAATTCTTTTAAATTTAG(+ACTCAC)GTACCCTTCTAAAGAAGGCCCTGGTTTCTTA NGG 10 8 17 8 24 0 100 5 10
    240605003111_zdtx ATTGATAAGAAACCAGGGCCTTCTTTAGAAGG(+ACTCAC)GTACCTAAATTTAAAAGAATTTTGAAAGGCT NGG 10 8 17 8 24 0 100 5 10
    240605003109_rfml TCCTCACTGTCCAAGTCTGATATGCTCCATCG(+ACTCAC)GATCCGCAGTTCAGGGGAAAGGTCACAGAGC NGG 10 8 17 8 24 0 100 5 10
    240605003108_7jxi ACATGGCTCTGTGACCTTTCCCCTGAACTGCG(+ACTCAC)GATCCGATGGAGCATATCAGACTTGGACAGT NGG 10 8 17 8 24 0 100 5 10
    240605003106_uy8f ATCAACTGCATTAAGTTGCCAGCACCTGCCGG(+ACTCAC)GATCCACGAGACAGAGAAACACTAAGCAATA NGG 10 8 17 8 24 0 100 5 10
    240605003105_rvfi ACTGCTATTGCTTAGTGTTTCTCTGTCTCGTG(+ACTCAC)GATCCCGGCAGGTGCTGGCAACTTAATGCAG NGG 10 8 17 8 24 0 100 5 10
    240605003103_vdnx CCTAACGGGGCACTGAGGCCGGGCTGCTTTAG(+ACTCAC)GATCCCAAGTGGCAAGAAAGCTCACATTTTT NGG 10 8 17 8 24 0 100 5 10