Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604230942_bnku GCAGCCGAGCATGAGCGTTACGGGAAGAGATG(+ACTCAC)GATCCTTACCAGGTTGTGAGGCGGGAACGAC NGG 10 8 17 8 24 0 100 5 10
    240604230940_5345 GAGCAGTCGTTCCCGCCTCACAACCTGGTAAG(+ACTCAC)GATCCATCTCTTCCCGTAACGCTCATGCTCG NGG 10 8 17 8 24 0 100 5 10
    240604230939_1wiv TTTTTTCCCCCACGATAGCATGTTTATTTTAG(+ACTCAC)GATCCATTAAATCATACATCTTTTCAAGCTA NGG 10 8 17 8 24 0 100 5 10
    240604230938_uka0 ATAGATAGCTTGAAAAGATGTATGATTTAATG(+ACTCAC)GATCCTAAAATAAACATGCTATCGTGGGGGA NGG 10 8 17 8 24 0 100 5 10
    240604230936_utu2 TGTTCAGAGAATGTATAGCAGGGGTTTGCCTG(+ACTCAC)GTACCTCTACATTGTCATCTCAATATCCCCA NGG 10 8 17 8 24 0 100 5 10
    240604230935_8rb0 CAACCTGGGGATATTGAGATGACAATGTAGAG(+ACTCAC)GTACCAGGCAAACCCCTGCTATACATTCTCT NGG 10 8 17 8 24 0 100 5 10
    240604230933_otqd AAGAACTTCAACTTTTGATAGGTTGCTAGCGG(+ACTCAC)GTACCCCCCTTGTGAGGGACTTAAAGCATAA NGG 10 8 17 8 24 0 100 5 10
    240604230930_k3kq AAAATTTATGCTTTAAGTCCCTCACAAGGGGG(+ACTCAC)GTACCCGCTAGCAACCTATCAAAAGTTGAAG NGG 10 8 17 8 24 0 100 5 10
    240604230928_ashx TTCTGGTTTCTGGAACTAGTGAGAGGCATGAG(+ACTCAC)GATCCAAGAAAAAGGCAGAGAGCAAGTAGGT NGG 10 8 17 8 24 0 100 5 10
    240604230927_9iaw AGTTAACCTACTTGCTCTCTGCCTTTTTCTTG(+ACTCAC)GATCCTCATGCCTCTCACTAGTTCCAGAAAC NGG 10 8 17 8 24 0 100 5 10