Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604200821_rttk TGGGTATGGATGGAGCCACACTCCTATGCAAG(+ACTCAC)GATCCATTTCCATGCAAGATTGTCAATTCTT NGG 10 8 17 8 24 0 100 5 10
    240604200819_xw5v TCTGGAAGAATTGACAATCTTGCATGGAAATG(+ACTCAC)GATCCTTGCATAGGAGTGTGGCTCCATCCAT NGG 10 8 17 8 24 0 100 5 10
    240604200818_p5pb TTTTTAAGATGCTTCTGGAGATTTAGAATCAG(+ACTCAC)GATCCAAAATAAGGCTGGGATTCAGCATCCA NGG 10 8 17 8 24 0 100 5 10
    240604200817_c55m AGTGGTGGATGCTGAATCCCAGCCTTATTTTG(+ACTCAC)GATCCTGATTCTAAATCTCCAGAAGCATCTT NGG 10 8 17 8 24 0 100 5 10
    240604200814_f47x TGAGCGTATCTGCTGTCCTTCTGCATGCCCAG(+ACTCAC)GTACCTCAGTTTTTTTCAACAGCAAGGAAAC NGG 10 8 17 8 24 0 100 5 10
    240604200813_37jy CCCTAGTTTCCTTGCTGTTGAAAAAAACTGAG(+ACTCAC)GTACCTGGGCATGCAGAAGGACAGCAGATAC NGG 10 8 17 8 24 0 100 5 10
    240604200812_qf6h TTCCTTTGGTTTAAGCCCGTTATAATTAAATG(+ACTCAC)GTACCAAAAGCTTTAAGAAGTGCTGTTCTAC NGG 10 8 17 8 24 0 100 5 10
    240604200810_9fec CACAAGTAGAACAGCACTTCTTAAAGCTTTTG(+ACTCAC)GTACCATTTAATTATAACGGGCTTAAACCAA NGG 10 8 17 8 24 0 100 5 10
    240604200809_t21z AAGAAGTAGGCACATGGAGCAGGTCCTAGGAG(+ACTCAC)GTACCCCCCTGCTCAAGTCAAGTTCTGTCCC NGG 10 8 17 8 24 0 100 5 10
    240604200806_vgs8 TAGAGGGGACAGAACTTGACTTGAGCAGGGGG(+ACTCAC)GTACCTCCTAGGACCTGCTCCATGTGCCTAC NGG 10 8 17 8 24 0 100 5 10