Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240604192220_vdur TGGCAAGGAAGTTCTGTGGGCACAGGGTTGTG(+ACTCAC)GTACCTACTTTATTGTTTTTTCCAGAATGGC NGG 10 8 17 8 24 0 100 5 10
    240604192218_a44v CTCTTCTCTCCTCTTTCTTTGATACTTCATGG(+ACTCAC)GTACCCAAAGGATGCTCTGAAGTCACAGAAG NGG 10 8 17 8 24 0 100 5 10
    240604192216_rr65 CTTTGCTTCTGTGACTTCAGAGCATCCTTTGG(+ACTCAC)GTACCCATGAAGTATCAAAGAAAGAGGAGAG NGG 10 8 17 8 24 0 100 5 10
    240604192213_dlmt GGCAGTTTCCTGAGACTGTAAAGTATTCCAGG(+ACTCAC)GATCCTTTTCCTGTGCGGATGCAGAAGCCAT NGG 10 8 17 8 24 0 100 5 10
    240604192212_ukry CTGGCATGGCTTCTGCATCCGCACAGGAAAAG(+ACTCAC)GATCCCTGGAATACTTTACAGTCTCAGGAAA NGG 10 8 17 8 24 0 100 5 10
    240604192210_9qag CAACACCATTTACCTAGAAAGGACCAAGTTTG(+ACTCAC)GATCCTGAAGCCCAGTGGAGCACCATTCTCT NGG 10 8 17 8 24 0 100 5 10
    240604192209_e3td CAGGCAGAGAATGGTGCTCCACTGGGCTTCAG(+ACTCAC)GATCCAAACTTGGTCCTTTCTAGGTAAATGG NGG 10 8 17 8 24 0 100 5 10
    240604192207_g99y TGAGAAGAGCCTCTGACAGGCATCAGAGCTGG(+ACTCAC)GATCCTGACCAAGGGACACTCAGGCTGCCAC NGG 10 8 17 8 24 0 100 5 10
    240604192206_b32s AGCTGGTGGCAGCCTGAGTGTCCCTTGGTCAG(+ACTCAC)GATCCCAGCTCTGATGCCTGTCAGAGGCTCT NGG 10 8 17 8 24 0 100 5 10
    240604192203_kawj ACAGATAGTGTATGAAATACACAATTTCCCAG(+ACTCAC)GTACCAAGGGCCAATAGCAAAAAGGGTCTCT NGG 10 8 17 8 24 0 100 5 10