Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240314015439_vky7hsr8 CAGGCGGCACCAGGCGGAGCCGCGAGGCCTGGAGAGTCCGAGTGG(-GGAGGGGTCCG)CGCGCCCAGCGTGCGAAACAAACCGGGGACCCGGATCCCCGTTGC NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7h5ot GAAGCTTGGGGTGTTTCAAAGAGATTCTTTTCGTGTTTTTGTGGT(-ATTTGGGTTTA)AGGGAGTGTACTGTTTGTTGCTGCAAACTACTGGCTTTGTTTTCA NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7fp1n CTTGGTGATTCTGATTTCCTGACTTGGAGTGGATTAAAGCAGGAA(-ATTAAGAGGGA)GTCAGGCTTTTTTTTTTTTTTTTTAGGCAGTATCTGTCTCTCTTG NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7fdnn TCACTTTAGTGATATTCGGTGTGCTACAGTCAGGTGGTCCTCAAA(-GGCCTTTCGGG)ACAAAGCCCTTGGGATGATTAACAGACCTACAGAGAACAAAAAGC NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7f8xy ACAGGGCATCCCCTGGGCCTGGCTGGGGCCACCAAACCATATGTG(-GCAGAGCCAGG)ATAGGAACGGAGCCTGCCCTACTAACTCCCTTTCTGGACTCAGGG NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7f5lp GATAAGGACAGGCCTGGGGAATGGGGATGATATGTGTGGCATGTG(-AGGTAAATTGG)GTAAATGACAGACTATTTTATATTTGTGACTTACGCGTCTTTTCA NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7ddp5 TTAGTAGTATTGCTCGAGATATGTAAAGTGTTCATCTCCTTTTGA(-TTGTGGAAGGG)ACAAAGGGACAGAGTCCAAGTGGTTCATATTAGAAATTGACTAGA NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7czvm TTCTAATCACTGCCTGTAATTGCAGAGCAGGCCAAGCCACTAATG(-ACGGAGCAGGA)TAAATCACCAACCACCTTGTTTAAAAGGGTCTCCAAGTCTGAAAC NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7cu2x CAATATAGTAGTAGCTGCATATGATTGAAAATTTACTAGGTCACT(-AGTGCACCAAA)AATTTTATTCACAGCCTCCAGGCATCTTTTGAAATGTGCAACAAA NGG 10 8 17 8 24 0 100 5 10
    240314015439_vky7cgk6 TTTGAATATAGCCAGAGGAAAAAAAGATGGAGAAAAAACTAGGAG(-AGGTAATTTTG)AAAAGAGATTTAATGTCATGTTCAGTCCGGGTAGATAAGAAATTC NGG 10 8 17 8 24 0 100 5 10