Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240314015439_vky705s5 CCTGCTCATTGGAATAATGAGCTGAATGTGTTTTAAGAAGTGGTT(-GGAAGAGTATG)AGAGATAGGTATCATTTTCTCAAAGGAAATGATTTTGACATTATT NGG 10 8 17 8 24 0 100 5 10
    240314012259_jk0g TGAACGGCTCCCAGAACCTTGTTCGTGTGTATGTGTGTAGACAAA(-ATGGCGCCGCG)GCCTTCTTCTGCGCCCGCCATCATGGCTGCCTGCTGTAGGGAGGG NGG 10 8 17 8 24 0 100 5 10
    240314011845_mddd CCCGAGCCCGGGGGAGGAGGGGAGTGCCCGTGTCCGTGTTGGGGT(-TTGAGGGGTCG)GGAGCGGCGTTGGTGGCGCGAGGTGTGAGGCTGCCCGCCGACGGA NGG 10 8 17 8 24 0 100 5 10
    240314011435_5ea9 GCGGCCGCGCCCCGCAGCTCTGTAGGCCCTGAAGCTCGGGCTAGG(-AGAGTGGTCCG)CAGGTGGTACCGCACGGGAAGGGACGGATGCGCGGCCGAGCTGGC NGG 10 8 17 8 24 0 100 5 10
    240314002058_6tni TCGGGTAAGGGGTTACATCCGGGAAACTCGTCAGGGAAATGGCGG(-GAGATGCTGAG)GGTGCGGGGCCTTTGGAATTCCTTGTTCCTTGCCCTCACCTTTAC NGG 10 8 17 8 24 0 100 5 10
    240314001833_0k5n GCGGCCGCGCCCCGCAGCTCTGTAGGCCCTGAAGCTCGGGCTAGG(-AGAGTGGTCCG)CAGGTGGTACCGCACGGGAAGGGACGGATGCGCGGCCGAGCTGGC NGG 10 8 17 8 24 0 100 5 10
    240314001728_f855 CAATATAGTAGTAGCTGCATATGATTGAAAATTTACTAGGTCACT(-AGTGCACCAAA)AATTTTATTCACAGCCTCCAGGCATCTTTTGAAATGTGCAACAAA NGG 10 8 17 8 24 0 100 5 10
    240314001511_kr4yy50y GGAGCACCAGCCCCTTTGTCCCACCACTCTGAGGAAAGGCACAGG(-GACAGCTGGTC)CAGCTTACAAAGGCCTCTTTCAGGGACCAGTCTGTCCAGCTCTGC NGG 10 8 17 8 24 0 100 5 10
    240314001511_kr4yy4lv TCTCCCGTTTTGTTTTAGTATTAGTGGAAGAAACTGGATTGGATA(-TCAGATCTGTT)TGAAAATGTATTTTCACATGGATCATTTTTTATTAATCTTTGAAT NGG 10 8 17 8 24 0 100 5 10
    240314001511_kr4yxhh8 GATAAGGACAGGCCTGGGGAATGGGGATGATATGTGTGGCATGTG(-AGGTAAATTGG)GTAAATGACAGACTATTTTATATTTGTGACTTACGCGTCTTTTCA NGG 10 8 17 8 24 0 100 5 10