Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613113838_nmv4 GGAAACACCGGAGCATAGACATCGGGCCTGTG(+AGGACA)GATCCAAGAAGAGACCTAGAATGGTTCCCTG NGG 10 8 17 8 24 0 100 5 10
    240613113837_a4q2 AATCCCAGGGAACCGTTCTAGGTCTCTTCTTG(+AGGACA)GATCCACAGGCCCGATGTCTATGCCCCGGTG NGG 10 8 17 8 24 0 100 5 10
    240613113835_l2au GGGAACACCGGGGCATAGACATCGGGCCTGTG(+AGGACA)GATCCAAGAAGAGACCTAGAACGGTTCCCTG NGG 10 8 17 8 24 0 100 5 10
    240613113834_k41j AATCCCAGGGAACCGTTCTAGGTCTCTTCTTG(+AGGACA)GATCCACAGGCCCGATGTCTATGCCCCGGTG NGG 10 8 17 8 24 0 100 5 10
    240613113832_8c3i GGGAACACCGGGGCATAGACATCGGGCCTGTG(+AGGACA)GATCCAAGAAGAGACCTAGAACGGTTCCCTG NGG 10 8 17 8 24 0 100 5 10
    240613113830_76km TAGATGGGCAGCAATGGGCAGTTGCAACCAAG(+AGGACA)GTACCCAGCAGTGTCTTCTACATCACCTATA NGG 10 8 17 8 24 0 100 5 10
    240613113829_w9c8 CTGGATATAGGTGATGTAGAAGACACTGCTGG(+AGGACA)GTACCTTGGTTGCAACTGCCCATTGCTGCCC NGG 10 8 17 8 24 0 100 5 10
    240613113827_7x41 GACAGGATGGGCTCCACACGTACCTGTGTTGG(+AGGACA)GATCCCCACATTCGCTGTAACCTATCTGTAG NGG 10 8 17 8 24 0 100 5 10
    240613113825_8bl2 GTGTGCTACAGATAGGTTACAGCGAATGTGGG(+AGGACA)GATCCCAACACAGGTACGTGTGGAGCCCATC NGG 10 8 17 8 24 0 100 5 10
    240613113824_i89v AAGAGCACCACCCAATCACAAGCCTGGGGTTG(+AGGACA)GATCCATGCCAGCCAAGGACTATGATTTCCA NGG 10 8 17 8 24 0 100 5 10