Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240613113955_hcem AGTGGTGGATGCTGAATCCCAGCCTTATTTTG(+AGGACA)GATCCTGATTCTAAATCTCCAGAAGCATCTT NGG 10 8 17 8 24 0 100 5 10
    240613113952_nm0e TGAGCGTATCTGCTGTCCTTCTGCATGCCCAG(+AGGACA)GTACCTCAGTTTTTTTCAACAGCAAGGAAAC NGG 10 8 17 8 24 0 100 5 10
    240613113951_t8t7 CCCTAGTTTCCTTGCTGTTGAAAAAAACTGAG(+AGGACA)GTACCTGGGCATGCAGAAGGACAGCAGATAC NGG 10 8 17 8 24 0 100 5 10
    240613113908_90lq TTCCTTTGGTTTAAGCCCGTTATAATTAAATG(+AGGACA)GTACCAAAAGCTTTAAGAAGTGCTGTTCTAC NGG 10 8 17 8 24 0 100 5 10
    240613113849_q0yh CACAAGTAGAACAGCACTTCTTAAAGCTTTTG(+AGGACA)GTACCATTTAATTATAACGGGCTTAAACCAA NGG 10 8 17 8 24 0 100 5 10
    240613113847_bx9z AAGAAGTAGGCACATGGAGCAGGTCCTAGGAG(+AGGACA)GTACCCCCCTGCTCAAGTCAAGTTCTGTCCC NGG 10 8 17 8 24 0 100 5 10
    240613113844_p8tb TAGAGGGGACAGAACTTGACTTGAGCAGGGGG(+AGGACA)GTACCTCCTAGGACCTGCTCCATGTGCCTAC NGG 10 8 17 8 24 0 100 5 10
    240613113842_yr2q CTGCTCTGGCTGACATGGTATATCAGAGGTTG(+AGGACA)GATCCTCTGAAACTGGATTTATGGGTTGTTG NGG 10 8 17 8 24 0 100 5 10
    240613113841_rd7u GCTCACAACAACCCATAAATCCAGTTTCAGAG(+AGGACA)GATCCAACCTCTGATATACCATGTCAGCCAG NGG 10 8 17 8 24 0 100 5 10
    240613113840_blim AATCCCAGGGAACCATTCTAGGTCTCTTCTTG(+AGGACA)GATCCACAGGCCCGATGTCTATGCTCCGGTG NGG 10 8 17 8 24 0 100 5 10