Enter the sequence


Example input
More Parameters

Example for substitution:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTGGCGCGA(/T)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for insertion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGCGCTG(+ATT)GCGCGAGGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Example for deletion:

CGCCGCCGCCTCTACTGGGGCTTCTTCTCGGGCCGCGGCCGCGTCAAGCCGGGGGGGC(-GCTGGCGCGA)GGCCGCCTGGCAACTCTGCGACTACTACCTGCC

Above three examples above represent the input formats of three different editing types.

  • The bases to be edited are marked with a pair of parentheses "()".

  • Substitution is indicated by backslash "/", and the example is used to replace A by T.

  • Insertion is indicated by plus sign "+", and the example indicates that ATT will be inserted at the parenthesis position

  • Deletion is indicated by minus sign "-", and the example indicates that GCTGGCGCGA will be deleted at the parenthesis position.

    • PAM Maximum Edit-to-Nick Distance
    Maximum PBS Length Maximum RTT Length
    Minimum PBS Length Minimum RTT Length
    Number of Optimized pegRNAs Assembly
    Minimum Nick-to-Nick Distance Maximum Nick-to-Nick Distance
    Minimum Downstream Homology

    Use an example: Substitution Insertion Deletion
    Example for FASTA file History
    UID Input sequence PAM CUT SIZE MIN PBS MAX PBS MIN RT MAX RT MIN DIS SGRNA MAX DIS SGRNA HOMOLOGY Number show
    240607011717_9z64 CTGGCCCTGTGCCTGTGGCACTTTCGCCTATG(+ATATAT)GTACCATCTCCCCAGTGCAAGTCATGGACTG NGG 10 8 17 8 24 0 100 5 10
    240607011716_wwrv GGAGGCAGTCCATGACTTGCACTGGGGAGATG(+ATATAT)GTACCATAGGCGAAAGTGCCACAGGCACAGG NGG 10 8 17 8 24 0 100 5 10
    240607011714_69fn TGGAACTCACACCAGGCATAAACAGACAGAGG(+ATATAT)GATCCGGAACGGCAAGACCTCGGAACACTAC NGG 10 8 17 8 24 0 100 5 10
    240607011712_pxze TCTGAGTAGTGTTCCGAGGTCTTGCCGTTCCG(+ATATAT)GATCCCTCTGTCTGTTTATGCCTGGTGTGAG NGG 10 8 17 8 24 0 100 5 10
    240607011710_ena6 GGAGGGACTCTCCTGGATTCAGACCTCCACAG(+ATATAT)GTACCCTGTGACTACCAAAGTTCAAGGGGAA NGG 10 8 17 8 24 0 100 5 10
    240607011709_7175 AGCCATTCCCCTTGAACTTTGGTAGTCACAGG(+ATATAT)GTACCTGTGGAGGTCTGAATCCAGGAGAGTC NGG 10 8 17 8 24 0 100 5 10
    240607011708_ielb GGGGGGAGGGCTGCCCAGGATGGGAGGATGTG(+ATATAT)GTACCACCATTATTGCTTCCTCCTAGGGCAA NGG 10 8 17 8 24 0 100 5 10
    240607011706_6eeh TCTCATTGCCCTAGGAGGAAGCAATAATGGTG(+ATATAT)GTACCACATCCTCCCATCCTGGGCAGCCCTC NGG 10 8 17 8 24 0 100 5 10
    240607011704_2jl6 GCAGCTCACGTGTACACCCACCCTGGCGGGAG(+ATATAT)GATCCGACTGAGGCCAGGGGTCTGGTCAGTC NGG 10 8 17 8 24 0 100 5 10
    240607011703_d2dn CCGAGGACTGACCAGACCCCTGGCCTCAGTCG(+ATATAT)GATCCTCCCGCCAGGGTGGGTGTACACGTGA NGG 10 8 17 8 24 0 100 5 10